diff --git a/2024.2/amplicon/passed/qiime2-amplicon-macos-latest-conda.yml b/2024.2/amplicon/passed/qiime2-amplicon-macos-latest-conda.yml index ab326a32..1011443b 100644 --- a/2024.2/amplicon/passed/qiime2-amplicon-macos-latest-conda.yml +++ b/2024.2/amplicon/passed/qiime2-amplicon-macos-latest-conda.yml @@ -127,7 +127,7 @@ dependencies: - fonts-conda-ecosystem=1 - fonts-conda-forge=1 - fonttools=4.47.0 -- formulaic=0.6.6 +- formulaic=1.0.1 - fqdn=1.5.1 - freetype=2.12.1 - fribidi=1.0.10 @@ -156,7 +156,7 @@ dependencies: - iniconfig=2.0.0 - interface_meta=1.3.0 - iow=1.0.5 -- ipykernel=6.26.0 +- ipykernel=6.28.0 - ipython=8.12.2 - ipython_genutils=0.2.0 - ipywidgets=8.1.1 @@ -171,13 +171,13 @@ dependencies: - jq=1.7.1 - jsonpointer=2.4 - jsonschema=4.20.0 -- jsonschema-specifications=2023.11.2 +- jsonschema-specifications=2023.12.1 - jsonschema-with-format-nongpl=4.20.0 - jupyter_client=7.4.9 -- jupyter_core=5.5.1 +- jupyter_core=5.6.0 - jupyter_events=0.9.0 - jupyter_server=2.12.1 -- jupyter_server_terminals=0.5.0 +- jupyter_server_terminals=0.5.1 - jupyterlab_pygments=0.3.0 - jupyterlab_widgets=3.0.9 - kiwisolver=1.4.5 @@ -323,7 +323,7 @@ dependencies: - pytest=7.4.3 - python=3.8.18 - python-dateutil=2.8.2 -- python-fastjsonschema=2.19.0 +- python-fastjsonschema=2.19.1 - python-isal=1.5.3 - python-json-logger=2.0.7 - python_abi=3.8 @@ -350,7 +350,7 @@ dependencies: - q2-quality-filter=2023.11.0.dev0+1.g032ad25 - q2-sample-classifier=2023.11.0.dev0+3.g7aef7e7 - q2-taxa=2023.11.0.dev0+1.g1efb0b0 -- q2-types=2023.11.0.dev0+1.g8a0e191 +- q2-types=2023.11.0.dev0+2.g1827eab - q2-vsearch=2023.11.0.dev0+3.gc8b3ace - q2cli=2023.11.0.dev0+12.g7cf7a7a - q2galaxy=2023.11.0.dev0+3.ga24b5bc @@ -576,7 +576,7 @@ dependencies: - requests=2.31.0 - rfc3339-validator=0.1.4 - rfc3986-validator=0.1.1 -- rpds-py=0.15.2 +- rpds-py=0.16.2 - samtools=1.18 - scikit-bio=0.5.8 - scikit-learn=0.24.1 diff --git a/2024.2/amplicon/passed/qiime2-amplicon-ubuntu-latest-conda.yml b/2024.2/amplicon/passed/qiime2-amplicon-ubuntu-latest-conda.yml index cc36a249..c070e054 100644 --- a/2024.2/amplicon/passed/qiime2-amplicon-ubuntu-latest-conda.yml +++ b/2024.2/amplicon/passed/qiime2-amplicon-ubuntu-latest-conda.yml @@ -123,7 +123,7 @@ dependencies: - fonts-conda-ecosystem=1 - fonts-conda-forge=1 - fonttools=4.47.0 -- formulaic=0.6.6 +- formulaic=1.0.1 - fqdn=1.5.1 - freetype=2.12.1 - fribidi=1.0.10 @@ -159,7 +159,7 @@ dependencies: - iniconfig=2.0.0 - interface_meta=1.3.0 - iow=1.0.5 -- ipykernel=6.26.0 +- ipykernel=6.28.0 - ipython=8.12.2 - ipython_genutils=0.2.0 - ipywidgets=8.1.1 @@ -174,13 +174,13 @@ dependencies: - jq=1.7.1 - jsonpointer=2.4 - jsonschema=4.20.0 -- jsonschema-specifications=2023.11.2 +- jsonschema-specifications=2023.12.1 - jsonschema-with-format-nongpl=4.20.0 - jupyter_client=7.4.9 -- jupyter_core=5.5.1 +- jupyter_core=5.6.0 - jupyter_events=0.9.0 - jupyter_server=2.12.1 -- jupyter_server_terminals=0.5.0 +- jupyter_server_terminals=0.5.1 - jupyterlab_pygments=0.3.0 - jupyterlab_widgets=3.0.9 - kernel-headers_linux-64=2.6.32 @@ -363,7 +363,7 @@ dependencies: - pytest=7.4.3 - python=3.8.15 - python-dateutil=2.8.2 -- python-fastjsonschema=2.19.0 +- python-fastjsonschema=2.19.1 - python-isal=1.5.3 - python-json-logger=2.0.7 - python_abi=3.8 @@ -390,7 +390,7 @@ dependencies: - q2-quality-filter=2023.11.0.dev0+1.g032ad25 - q2-sample-classifier=2023.11.0.dev0+3.g7aef7e7 - q2-taxa=2023.11.0.dev0+1.g1efb0b0 -- q2-types=2023.11.0.dev0+1.g8a0e191 +- q2-types=2023.11.0.dev0+2.g1827eab - q2-vsearch=2023.11.0.dev0+3.gc8b3ace - q2cli=2023.11.0.dev0+12.g7cf7a7a - q2galaxy=2023.11.0.dev0+3.ga24b5bc @@ -617,7 +617,7 @@ dependencies: - requests=2.31.0 - rfc3339-validator=0.1.4 - rfc3986-validator=0.1.1 -- rpds-py=0.15.2 +- rpds-py=0.16.2 - samtools=1.18 - scikit-bio=0.5.8 - scikit-learn=0.24.1 diff --git a/2024.2/amplicon/passed/seed-environment-conda.yml b/2024.2/amplicon/passed/seed-environment-conda.yml index 10819fb6..75dc7d1b 100644 --- a/2024.2/amplicon/passed/seed-environment-conda.yml +++ b/2024.2/amplicon/passed/seed-environment-conda.yml @@ -34,7 +34,7 @@ dependencies: - q2-quality-filter=2023.11.0.dev0+1.g032ad25 - q2-sample-classifier=2023.11.0.dev0+3.g7aef7e7 - q2-taxa=2023.11.0.dev0+1.g1efb0b0 -- q2-types=2023.11.0.dev0+1.g8a0e191 +- q2-types=2023.11.0.dev0+2.g1827eab - q2-vsearch=2023.11.0.dev0+3.gc8b3ace - q2cli=2023.11.0.dev0+12.g7cf7a7a - q2galaxy=2023.11.0.dev0+3.ga24b5bc diff --git a/2024.2/amplicon/staged/seed-environment-conda.yml b/2024.2/amplicon/staged/seed-environment-conda.yml index d024ef98..b198ddf7 100644 --- a/2024.2/amplicon/staged/seed-environment-conda.yml +++ b/2024.2/amplicon/staged/seed-environment-conda.yml @@ -34,7 +34,7 @@ dependencies: - q2-quality-filter=2023.11.0.dev0+1.g032ad25 - q2-sample-classifier=2023.11.0.dev0+3.g7aef7e7 - q2-taxa=2023.11.0.dev0+1.g1efb0b0 -- q2-types=2023.11.0.dev0+1.g8a0e191 +- q2-types=2023.11.0.dev0+2.g1827eab - q2-vsearch=2023.11.0.dev0+3.gc8b3ace - q2cli=2023.11.0.dev0+12.g7cf7a7a - q2galaxy=2023.11.0.dev0+3.ga24b5bc