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"pytest-timeout"] +discord = ["requests"] notebook = ["ipywidgets (>=6)"] slack = ["slack-sdk"] telegram = ["requests"] diff --git a/symmer/.DS_Store b/symmer/.DS_Store index b80ade34..c0998b76 100644 Binary files a/symmer/.DS_Store and b/symmer/.DS_Store differ diff --git a/symmer/utils.py b/symmer/utils.py index c61c2b49..b6902b3f 100644 --- a/symmer/utils.py +++ b/symmer/utils.py @@ -224,77 +224,77 @@ def gram_schmidt_from_quantum_state(state:Union[np.array, list, QuantumState]) - return M -def get_sparse_matrix_large_pauliwordop(P_op: PauliwordOp) -> csr_matrix: - """ - In order to build the sparse matrix (e.g. above 18 qubits), this function goes through each pauli term - divides into two equally sized tensor products finds the sparse matrix of those and then does a sparse - kron product to get the large matrix. - - TODO: Could also add how many chunks to split problem into (e.g. three/four/... tensor products). - - Args: - P_op (PauliwordOp): Pauli operator to convert into sparse matrix - Returns: - mat (csr_matrix): sparse matrix of P_op - """ - nq = P_op.n_qubits - if nq<16: - mat = P_op.to_sparse_matrix - else: - # n_cpus = mp.cpu_count() - # P_op_chunks_inds = np.rint(np.linspace(0, P_op.n_terms, min(n_cpus, P_op.n_terms))).astype(set).astype(int) - # - # # miss zero index out (as emtpy list) - # P_op_chunks = [P_op[P_op_chunks_inds[ind_i]: P_op_chunks_inds[ind_i+1]] for ind_i, _ in enumerate(P_op_chunks_inds[1:])] - # with mp.Pool(n_cpus) as pool: - # tracker = pool.map(_get_sparse_matrix_large_pauliwordop, P_op_chunks) - - # plus one below due to indexing (actual number of chunks ignores this value) - n_chunks = os.cpu_count() - if (n_chunks<=1) or (P_op.n_terms<=1): - # no multiprocessing possible - mat = get(_get_sparse_matrix_large_pauliwordop.remote(P_op)) - else: - # plus one below due to indexing (actual number of chunks ignores this value) - n_chunks += 1 - P_op_chunks_inds = np.rint(np.linspace(0, P_op.n_terms, min(n_chunks, P_op.n_terms+1))).astype(set).astype(int) - P_op_chunks = [P_op[P_op_chunks_inds[ind_i]: P_op_chunks_inds[ind_i + 1]] for ind_i, _ in - enumerate(P_op_chunks_inds[1:])] - tracker = np.array(get( - [_get_sparse_matrix_large_pauliwordop.remote(op) for op in P_op_chunks])) - mat = reduce(lambda x, y: x + y, tracker) - - return mat - -@remote(num_cpus=os.cpu_count(), - runtime_env={ - "env_vars": { - "NUMBA_NUM_THREADS": os.getenv("NUMBA_NUM_THREADS"), - # "OMP_NUM_THREADS": str(os.cpu_count()), - "OMP_NUM_THREADS": os.getenv("NUMBA_NUM_THREADS"), - "NUMEXPR_MAX_THREADS": str(os.cpu_count()) - } - } - ) -def _get_sparse_matrix_large_pauliwordop(P_op: PauliwordOp) -> csr_matrix: - """ - """ - nq = P_op.n_qubits - mat = csr_matrix(([], ([],[])), shape=(2**nq,2**nq)) - for op in P_op: - left_tensor = np.hstack((op.X_block[:, :nq // 2], - op.Z_block[:, :nq // 2])) - left_coeff = op.coeff_vec - - right_tensor = np.hstack((op.X_block[:, nq // 2:], - op.Z_block[:, nq // 2:])) - right_coeff = np.array([1]) - - mat += sparse_kron(PauliwordOp(left_tensor, left_coeff).to_sparse_matrix, - PauliwordOp(right_tensor, right_coeff).to_sparse_matrix, - format='csr') # setting format makes this faster! - - return mat +# def get_sparse_matrix_large_pauliwordop(P_op: PauliwordOp) -> csr_matrix: +# """ +# In order to build the sparse matrix (e.g. above 18 qubits), this function goes through each pauli term +# divides into two equally sized tensor products finds the sparse matrix of those and then does a sparse +# kron product to get the large matrix. + +# TODO: Could also add how many chunks to split problem into (e.g. three/four/... tensor products). + +# Args: +# P_op (PauliwordOp): Pauli operator to convert into sparse matrix +# Returns: +# mat (csr_matrix): sparse matrix of P_op +# """ +# nq = P_op.n_qubits +# if nq<16: +# mat = P_op.to_sparse_matrix +# else: +# # n_cpus = mp.cpu_count() +# # P_op_chunks_inds = np.rint(np.linspace(0, P_op.n_terms, min(n_cpus, P_op.n_terms))).astype(set).astype(int) +# # +# # # miss zero index out (as emtpy list) +# # P_op_chunks = [P_op[P_op_chunks_inds[ind_i]: P_op_chunks_inds[ind_i+1]] for ind_i, _ in enumerate(P_op_chunks_inds[1:])] +# # with mp.Pool(n_cpus) as pool: +# # tracker = pool.map(_get_sparse_matrix_large_pauliwordop, P_op_chunks) + +# # plus one below due to indexing (actual number of chunks ignores this value) +# n_chunks = os.cpu_count() +# if (n_chunks<=1) or (P_op.n_terms<=1): +# # no multiprocessing possible +# mat = get(_get_sparse_matrix_large_pauliwordop.remote(P_op)) +# else: +# # plus one below due to indexing (actual number of chunks ignores this value) +# n_chunks += 1 +# P_op_chunks_inds = np.rint(np.linspace(0, P_op.n_terms, min(n_chunks, P_op.n_terms+1))).astype(set).astype(int) +# P_op_chunks = [P_op[P_op_chunks_inds[ind_i]: P_op_chunks_inds[ind_i + 1]] for ind_i, _ in +# enumerate(P_op_chunks_inds[1:])] +# tracker = np.array(get( +# [_get_sparse_matrix_large_pauliwordop.remote(op) for op in P_op_chunks])) +# mat = reduce(lambda x, y: x + y, tracker) + +# return mat + +# @remote(num_cpus=os.cpu_count(), +# runtime_env={ +# "env_vars": { +# "NUMBA_NUM_THREADS": os.getenv("NUMBA_NUM_THREADS"), +# # "OMP_NUM_THREADS": str(os.cpu_count()), +# "OMP_NUM_THREADS": os.getenv("NUMBA_NUM_THREADS"), +# "NUMEXPR_MAX_THREADS": str(os.cpu_count()) +# } +# } +# ) +# def _get_sparse_matrix_large_pauliwordop(P_op: PauliwordOp) -> csr_matrix: +# """ +# """ +# nq = P_op.n_qubits +# mat = csr_matrix(([], ([],[])), shape=(2**nq,2**nq)) +# for op in P_op: +# left_tensor = np.hstack((op.X_block[:, :nq // 2], +# op.Z_block[:, :nq // 2])) +# left_coeff = op.coeff_vec + +# right_tensor = np.hstack((op.X_block[:, nq // 2:], +# op.Z_block[:, nq // 2:])) +# right_coeff = np.array([1]) + +# mat += sparse_kron(PauliwordOp(left_tensor, left_coeff).to_sparse_matrix, +# PauliwordOp(right_tensor, right_coeff).to_sparse_matrix, +# format='csr') # setting format makes this faster! + +# return mat def matrix_allclose(A: Union[csr_matrix, np.array], B:Union[csr_matrix, np.array], tol:int = 1e-15) -> bool: diff --git a/tests/.DS_Store b/tests/.DS_Store index 1ebd65c9..4129e175 100644 Binary files a/tests/.DS_Store and b/tests/.DS_Store differ diff --git a/tests/test_symmer_utils.py b/tests/test_symmer_utils.py index e714dc45..e8615291 100644 --- a/tests/test_symmer_utils.py +++ b/tests/test_symmer_utils.py @@ -1,7 +1,7 @@ from symmer.operators import PauliwordOp, QuantumState from symmer.utils import (exact_gs_energy, random_anitcomm_2n_1_PauliwordOp, tensor_list, gram_schmidt_from_quantum_state, product_list, - get_sparse_matrix_large_pauliwordop, matrix_allclose) + matrix_allclose) import numpy as np from openfermion import QubitOperator @@ -445,38 +445,38 @@ def test_gram_schmidt_from_quantum_state_numpy_array(): assert np.allclose(U_gram[:, 0], psi_norm), 'first column of U_gram not correct' assert np.allclose(U_gram @ U_gram.conj().T, np.eye(2 ** nq)), 'U_gram not unitary' -def test_get_sparse_matrix_large_pauliwordop(): - for nq in range(2,6): - n_terms = 10*nq - random_P = PauliwordOp.random(nq, n_terms) - sparse_mat = get_sparse_matrix_large_pauliwordop(random_P) - assert np.allclose(random_P.to_sparse_matrix.toarray(), - sparse_mat.toarray()) - -def test_matrix_allclose_sparse(): - for nq in range(2,6): - n_terms = 10*nq - random_P = PauliwordOp.random(nq, n_terms) - sparse_mat = get_sparse_matrix_large_pauliwordop(random_P) - assert matrix_allclose(random_P.to_sparse_matrix, - sparse_mat) - - # assert false output - Pop_XI= PauliwordOp.from_list(['XI']).to_sparse_matrix - Pop_ZI = PauliwordOp.from_list(['ZI']).to_sparse_matrix - assert not matrix_allclose(Pop_XI, - Pop_ZI) - -def test_matrix_allclose_dense(): - for nq in range(2,6): - n_terms = 10*nq - random_P = PauliwordOp.random(nq, n_terms) - sparse_mat = get_sparse_matrix_large_pauliwordop(random_P) - assert matrix_allclose(random_P.to_sparse_matrix.toarray(), - sparse_mat.toarray()) - - # assert false output - Pop_XI= PauliwordOp.from_list(['XI']).to_sparse_matrix - Pop_ZI = PauliwordOp.from_list(['ZI']).to_sparse_matrix - assert not matrix_allclose(Pop_XI.toarray(), - Pop_ZI.toarray()) \ No newline at end of file +# def test_get_sparse_matrix_large_pauliwordop(): +# for nq in range(2,6): +# n_terms = 10*nq +# random_P = PauliwordOp.random(nq, n_terms) +# sparse_mat = get_sparse_matrix_large_pauliwordop(random_P) +# assert np.allclose(random_P.to_sparse_matrix.toarray(), +# sparse_mat.toarray()) + +# def test_matrix_allclose_sparse(): +# for nq in range(2,6): +# n_terms = 10*nq +# random_P = PauliwordOp.random(nq, n_terms) +# sparse_mat = get_sparse_matrix_large_pauliwordop(random_P) +# assert matrix_allclose(random_P.to_sparse_matrix, +# sparse_mat) + +# # assert false output +# Pop_XI= PauliwordOp.from_list(['XI']).to_sparse_matrix +# Pop_ZI = PauliwordOp.from_list(['ZI']).to_sparse_matrix +# assert not matrix_allclose(Pop_XI, +# Pop_ZI) + +# def test_matrix_allclose_dense(): +# for nq in range(2,6): +# n_terms = 10*nq +# random_P = PauliwordOp.random(nq, n_terms) +# sparse_mat = get_sparse_matrix_large_pauliwordop(random_P) +# assert matrix_allclose(random_P.to_sparse_matrix.toarray(), +# sparse_mat.toarray()) + +# # assert false output +# Pop_XI= PauliwordOp.from_list(['XI']).to_sparse_matrix +# Pop_ZI = PauliwordOp.from_list(['ZI']).to_sparse_matrix +# assert not matrix_allclose(Pop_XI.toarray(), +# Pop_ZI.toarray()) \ No newline at end of file