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setup.py
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# -*- coding: utf-8 -*-
from setuptools import setup,find_packages
import os,sys
import string
import logging
#logging.basicConfig(filename = "installer.log", level=logging.DEBUG)
import shutil
import site
developMode = False
if len(sys.argv) >= 2:
if sys.argv[1] == "develop": developMode = True
if developMode:
logging.warning("You have selected a developer model ( local install)")
if sys.maxsize < 2**32:
raise Exception ("32-bit python version detected. PyCGM2-python3 requires a 64 bits python version")
VERSION ="4.3.1-rc3"
# just get one of the site-package and install there (it can be dist-package)
SITE_PACKAGE_PATH = site.getsitepackages()[0] + "\\"
pyversion = str(sys.version_info.major) + "."+ str(sys.version_info.minor)
logging.info("python version used : " + pyversion)
# if pyversion not in ["3.7","3.8","3.9"]:
# raise Exception ("pycgm2 not compatible with your python version")
NAME_IN_SITEPACKAGE = "pyCGM2-"+VERSION+"-py"+pyversion+".egg"
MAIN_PYCGM2_PATH = os.getcwd() + "\\"
PYCGM2_SETTINGS_FOLDER = MAIN_PYCGM2_PATH+"PyCGM2\\Settings\\"
NEXUS_PYCGM2_VST_PATH = MAIN_PYCGM2_PATH + "PyCGM2\\Install\\vst\\"
NEXUS_PIPELINE_TEMPLATE_PATH = MAIN_PYCGM2_PATH + "PyCGM2\\Install\\pipelineTemplate\\"
PATH_TO_PYTHON_SCRIPTS = os.path.dirname(sys.executable)+"\\Scripts\\"
# do not serve anymore since all apps are now in Scripts ( i still keep it)
if not developMode:
PATH_IN_SITEPACKAGE = SITE_PACKAGE_PATH+NAME_IN_SITEPACKAGE+"\\"
else:
PATH_IN_SITEPACKAGE = MAIN_PYCGM2_PATH
# PUBLIC env may not be defined by the user
if os.getenv("PUBLIC") is not None:
user_folder = os.getenv("PUBLIC")
else:
user_folder = "~/"
NEXUS_PUBLIC_PATH = user_folder+"\\Documents\\Vicon\\Nexus2.x\\"
NEXUS_PUBLIC_DOCUMENT_VST_PATH = NEXUS_PUBLIC_PATH + "ModelTemplates\\"
NEXUS_PUBLIC_DOCUMENT_PIPELINE_PATH = NEXUS_PUBLIC_PATH+"Configurations\\Pipelines\\"
def parse_requirements(requirements):
try:
with open(requirements) as f:
return [l.strip('\n') for l in f if l.strip('\n') and not l.startswith('#')]
except:
return []
reqs = parse_requirements("requirements.txt")
def scanViconTemplatePipeline(sourcePath,desPath,pyCGM2nexusAppsPath):
toreplace= "[TOREPLACE]"
sourcePath = sourcePath[:-1] if sourcePath[-1:]=="\\" else sourcePath
desPath = desPath[:-1] if desPath[-1:]=="\\" else desPath
pyCGM2nexusAppsPath = pyCGM2nexusAppsPath[:-1] if pyCGM2nexusAppsPath[-1:]=="\\" else pyCGM2nexusAppsPath
pyCGM2nexusAppsPath_antislash = pyCGM2nexusAppsPath.replace('\\', '/')
for file in os.listdir(sourcePath):
with open(sourcePath+"\\"+file, 'r') as f:
file_contents = f.read()
content = file_contents.replace(toreplace,pyCGM2nexusAppsPath_antislash)
if not os.path.isfile( desPath +"\\"+ file):
with open(desPath + "\\"+file, "w") as text_file:
text_file.write(content)
def gen_data_files(*dirs):
results = []
for src_dir in dirs:
for root,dirs,files in os.walk(src_dir):
results.append((root, map(lambda f:root + "/" + f, files)))
return results
def gen_data_files_forScripts(*dirs):
results = []
for src_dir in dirs:
for root,dirs,files in os.walk(src_dir):
for file in files:
if file[-3:] ==".py":
results.append(os.path.join(root, file))
return results
def getSubDirectories(dir):
subdirs = [d for d in os.listdir(dir) if os.path.isdir(os.path.join(dir, d))]
return subdirs
def getFiles(dir):
return [f for f in os.listdir(dir) if os.path.isfile(os.path.join(dir, f))]
#------------------------- UNINSTALL--------------------------------------------
# remove pyCGM2 folder or egg-link
dirSitepackage = getSubDirectories(SITE_PACKAGE_PATH[:-1])
for folder in dirSitepackage:
if "pyCGM2" in folder:
shutil.rmtree(SITE_PACKAGE_PATH+folder)
logging.info("package pyCGM2 (%s) removed"%(folder))
if "pyCGM2.egg-link" in os.listdir(SITE_PACKAGE_PATH[:-1]):
os.remove(SITE_PACKAGE_PATH+"pyCGM2.egg-link")
# remove Build/dist/egg info in the downloaded folder
localDirPath = os.path.abspath(os.path.join(os.path.dirname(os.path.realpath(__file__))))
localDirPathDirs = getSubDirectories(localDirPath)
if "build" in localDirPathDirs: shutil.rmtree(localDirPath+"\\build")
if "dist" in localDirPathDirs: shutil.rmtree(localDirPath+"\\dist")
# use backward slash because gives error (in general use backward slash)
if "pyCGM2.egg-info" in localDirPathDirs: shutil.rmtree(localDirPath+"/pyCGM2.egg-info")
# # delete everything in programData
# if os.getenv("PROGRAMDATA") is not None:
# pd = os.getenv("PROGRAMDATA")
# pddirs = getSubDirectories(pd)
# if "pyCGM2" in pddirs:
# shutil.rmtree(pd+"\\pyCGM2")
# logging.info("pprogramData/pyCGM2---> remove")
if os.path.isdir(NEXUS_PUBLIC_PATH):
# delete all previous vst and pipelines in Nexus Public Documents
files = getFiles(NEXUS_PUBLIC_DOCUMENT_VST_PATH)
for file in files:
if "pyCGM2" in file[0:6]: # check 6 first letters
os.remove(os.path.join(NEXUS_PUBLIC_DOCUMENT_VST_PATH,file))
files = getFiles(NEXUS_PUBLIC_DOCUMENT_PIPELINE_PATH)
for file in files:
if "pyCGM2" in file[0:6]:
os.remove(os.path.join(NEXUS_PUBLIC_DOCUMENT_PIPELINE_PATH,file))
# dirs = getSubDirectories(NEXUS_PUBLIC_DOCUMENT_PIPELINE_PATH)
# if "pyCGM2" in dirs:
# shutil.rmtree(NEXUS_PUBLIC_DOCUMENT_PIPELINE_PATH+"pyCGM2")
#------------------------------------------------------------------
#------------------------- PRE INSTALL---------------------------------------
#--- management of the folder ProgramData/pyCGM2----
# if not developMode:
# if os.getenv("PROGRAMDATA"):
# PYCGM2_APPDATA_PATH = os.getenv("PROGRAMDATA")+"\\pyCGM2"
# shutil.copytree(PYCGM2_SETTINGS_FOLDER[:-1], PYCGM2_APPDATA_PATH)
#--- management of nexus-related files ( vst+pipelines)-----
if os.path.isdir(NEXUS_PUBLIC_PATH):
# vst
content = os.listdir(NEXUS_PYCGM2_VST_PATH[:-1])
for item in content:
full_filename = os.path.join(NEXUS_PYCGM2_VST_PATH, item)
shutil.copyfile(full_filename, os.path.join(NEXUS_PUBLIC_DOCUMENT_VST_PATH,item))
scanViconTemplatePipeline(NEXUS_PIPELINE_TEMPLATE_PATH,
NEXUS_PUBLIC_DOCUMENT_PIPELINE_PATH,
PATH_TO_PYTHON_SCRIPTS)
else:
logging.error("[pyCGM2] - Nexus folder not detected - No generation of VST and pipelines")
#------------------------- INSTALL--------------------------------------------
setup(name = 'pyCGM2',
version = VERSION,
author = 'Fabien Leboeuf',
author_email = '[email protected]',
description = "Conventional Gait models and Gait analysis",
long_description= "A python implementation of the conventional gait models and methods for processing gait motion capture data",
url = 'https://github.com/pyCGM2/pyCGM2',
keywords = 'python CGM Vicon PluginGait CGM Gait',
packages=find_packages(),
include_package_data=True,
license='CC-BY-SA',
install_requires = reqs,
#'qtmWebGaitReport>=0.0.1'],
classifiers=['Programming Language :: Python',
'Programming Language :: Python :: 3.7',
'Programming Language :: Python :: 3.8',
'Programming Language :: Python :: 3.9',
'Programming Language :: Python :: 3.10',
'Programming Language :: Python :: 3.11',
'Operating System :: Microsoft :: Windows',
'Natural Language :: English'],
#scripts=gen_data_files_forScripts("Apps/ViconApps")
entry_points={
'console_scripts': [
#RULE THEM ALL COMMANDS
'pyCGM2 = pyCGM2.Apps.Commands.rullThemAllCommands:main',
# deprecated------------------------------------------
'Nexus_CGM1_Calibration = pyCGM2.Apps.ViconApps.CGM1.CGM1_Calibration:main',
'Nexus_CGM1_Fitting = pyCGM2.Apps.ViconApps.CGM1.CGM1_Fitting:main',
'Nexus_CGM11_Calibration = pyCGM2.Apps.ViconApps.CGM1_1.CGM1_1_Calibration:main',
'Nexus_CGM11_Fitting = pyCGM2.Apps.ViconApps.CGM1_1.CGM1_1_Fitting:main',
'Nexus_CGM21_Calibration = pyCGM2.Apps.ViconApps.CGM2_1.CGM2_1_Calibration:main',
'Nexus_CGM21_Fitting = pyCGM2.Apps.ViconApps.CGM2_1.CGM2_1_Fitting:main',
'Nexus_CGM22_Calibration = pyCGM2.Apps.ViconApps.CGM2_2.CGM2_2_Calibration:main',
'Nexus_CGM22_Fitting = pyCGM2.Apps.ViconApps.CGM2_2.CGM2_2_Fitting:main',
'Nexus_CGM23_Calibration = pyCGM2.Apps.ViconApps.CGM2_3.CGM2_3_Calibration:main',
'Nexus_CGM23_Fitting = pyCGM2.Apps.ViconApps.CGM2_3.CGM2_3_Fitting:main',
'Nexus_CGM24_Calibration = pyCGM2.Apps.ViconApps.CGM2_4.CGM2_4_Calibration:main',
'Nexus_CGM24_Fitting = pyCGM2.Apps.ViconApps.CGM2_4.CGM2_4_Fitting:main',
'Nexus_CGM25_Calibration = pyCGM2.Apps.ViconApps.CGM2_5.CGM2_5_Calibration:main',
'Nexus_CGM25_Fitting = pyCGM2.Apps.ViconApps.CGM2_5.CGM2_5_Fitting:main',
'Nexus_CGM26_2DOF = pyCGM2.Apps.ViconApps.CGM2_6.CGM_Knee2DofCalibration:main',
'Nexus_CGM26_SARA = pyCGM2.Apps.ViconApps.CGM2_6.CGM_KneeSARA:main',
# deprecated -------
'Nexus_plot_MAP = pyCGM2.Apps.ViconApps.Plot.deprecated.plotMAP:main',
'Nexus_plot_normalizedKinematics = pyCGM2.Apps.ViconApps.Plot.deprecated.plotNormalizedKinematics:main',
'Nexus_plot_normalizedKinetics = pyCGM2.Apps.ViconApps.Plot.deprecated.plotNormalizedKinetics:main',
'Nexus_plot_spatioTemporalParameters = pyCGM2.Apps.ViconApps.Plot.deprecated.plotSpatioTemporalParameters:main',
'Nexus_plot_temporalKinematics = pyCGM2.Apps.ViconApps.Plot.deprecated.plotTemporalKinematics:main',
'Nexus_plot_temporalKinetics = pyCGM2.Apps.ViconApps.Plot.deprecated.plotTemporalKinetics:main',
'Nexus_plot_comparison_normalizedKinematics = pyCGM2.Apps.ViconApps.Plot.deprecated.plotCompareNormalizedKinematics:main',
'Nexus_plot_comparison_normalizedKinetics = pyCGM2.Apps.ViconApps.Plot.deprecated.plotCompareNormalizedKinetics:main',
'Nexus_plot_normalizedEmg = pyCGM2.Apps.ViconApps.Plot.deprecated.plotNormalizedEmg:main',
'Nexus_plot_temporalEmg = pyCGM2.Apps.ViconApps.Plot.deprecated.plotTemporalEmg:main',
'Nexus_plot_comparison_normalizedEmg = pyCGM2.Apps.ViconApps.Plot.deprecated.plotCompareNormalizedEmg:main',
#deprecated -------
'Nexus_zeniDetector = pyCGM2.Apps.ViconApps.Events.zeniDetector:main',
'Nexus_KalmanGapFilling = pyCGM2.Apps.ViconApps.MoGapFill.KalmanGapFilling:main'
]
},
)