test-coverage.yaml

on:
  push:
    branches:
      - main
      - master
  pull_request:
    branches:
      - main
      - master

name: covr

jobs:
  test-coverage:
    runs-on: ubuntu-18.04

    # Begin custom: services
    # End custom: services
    env:
      R_REMOTES_NO_ERRORS_FROM_WARNINGS: true
      RSPM: "https://packagemanager.rstudio.com/cran/__linux__/bionic/latest"
      GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
      # prevent rgl issues because no X11 display is available
      RGL_USE_NULL: true
      # Begin custom: env vars
      # End custom: env vars

    steps:
      - name: Check rate limits
        run: |
          curl -s --header "authorization: Bearer ${{ secrets.GITHUB_TOKEN }}" https://api.github.com/rate_limit
        shell: bash

      - uses: actions/checkout@v2

      # Begin custom: before install
      # End custom: before install

      - uses: r-lib/actions/setup-r@v1
        with:
          install-r: false

      - uses: r-lib/actions/setup-pandoc@v1

      - name: Install remotes
        run: |
          if (!requireNamespace("curl", quietly = TRUE)) install.packages("curl")
          if (!requireNamespace("remotes", quietly = TRUE)) install.packages("remotes")
        shell: Rscript {0}

      - name: Query dependencies
        if: runner.os != 'Windows'
        run: |
          saveRDS(remotes::dev_package_deps(dependencies = TRUE, type = .Platform$pkgType), ".github/depends.Rds", version = 2)
          writeLines(sprintf("R-%i.%i", getRversion()$major, getRversion()$minor), ".github/R-version")
        shell: Rscript {0}

      - name: Restore R package cache
        if: runner.os != 'Windows'
        uses: actions/cache@v2
        with:
          path: ${{ env.R_LIBS_USER }}
          key: ubuntu-18.04-${{ hashFiles('.github/R-version') }}-2-${{ hashFiles('.github/depends.Rds') }}
          restore-keys: ubuntu-18.04-${{ hashFiles('.github/R-version') }}-2-

      - name: Install system dependencies
        if: runner.os == 'Linux'
        run: |
          sudo apt-get update -y
          while read -r cmd
          do
            eval sudo $cmd
          done < <(Rscript -e 'writeLines(remotes::system_requirements("ubuntu", "18.04"))')

      - name: Add fake qpdf and checkbashisms
        if: runner.os == 'Linux'
        run: |
          sudo ln -s $(which true) /usr/local/bin/qpdf
          sudo ln -s $(which true) /usr/local/bin/checkbashisms

      - name: Install dependencies
        run: |
          remotes::install_deps(dependencies = TRUE, type = .Platform$pkgType)
          remotes::install_cran("covr")
        shell: Rscript {0}

      - name: Session info
        run: |
          options(width = 100)
          if (!requireNamespace("sessioninfo", quietly = TRUE)) install.packages("sessioninfo")
          pkgs <- installed.packages()[, "Package"]
          sessioninfo::session_info(pkgs, include_base = TRUE)
        shell: Rscript {0}

      # Begin custom: after install
      # End custom: after install

      - name: Test coverage
        run: covr::codecov()
        shell: Rscript {0}

      - name: Check rate limits
        if: always()
        run: |
          curl -s --header "authorization: Bearer ${{ secrets.GITHUB_TOKEN }}" https://api.github.com/rate_limit
        shell: bash