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thesis.bib
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%
% This is file `coppe.bib'.
%
% Bibliographic references for the documentation.
%
% Copyright (C) 2011 CoppeTeX Project and any individual authors listed
% elsewhere in this file.
%
% This program is free software; you can redistribute it and/or modify
% it under the terms of the GNU General Public License version 3 as
% published by the Free Software Foundation.
%
% This program is distributed in the hope that it will be useful,
% but WITHOUT ANY WARRANTY; without even the implied warranty of
% MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
% GNU General Public License version 3 for more details.
%
% You should have received a copy of the GNU General Public License
% version 3 along with this package (see COPYING file).
% If not, see <http://www.gnu.org/licenses/>.
%
% $URL: https://coppetex.svn.sourceforge.net/svnroot/coppetex/trunk/coppe.bib $
% $Id: coppe.bib 118 2008-10-18 14:17:06Z helano $
%
% Author(s): Vicente H. F. Batista
% George O. Ainsworth Jr.
%
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% MY PUBLICATIONS %%%%%%%%%%%%%%%%%%%%%%%
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@inproceedings{Souza2015Parallel,
location = {Salt Lake City, {USA}},
title = {Parallel Execution of Workflows Driven by a Distributed Database Management System},
url = {http://sc15.supercomputing.org/sites/all/themes/SC15images/tech_poster/tech_poster_pages/post284.html},
pages = {1--3},
booktitle = {{ACM}/{IEEE} International Conference for High Performance Computing, Networking, Storage, and Analysis ({SC})},
author = {Souza, Renan and Silva, Vítor and Oliveira, Daniel and Valduriez, Patrick and Lima, Alexandre A. B. and Mattoso, Marta},
year = {2015}
}
@inproceedings{Silva2016Integrating,
location = {Salt Lake City, {USA}},
title = {Integrating Domain-data Steering with Code-profiling Tools to Debug Data-intensive Workflows},
booktitle = {Workflows in Support of Large-Scale Science ({WORKS}) workshop co-located with the {ACM}/{IEEE} International Conference for High Performance Computing, Networking, Storage, and Analysis ({SC})},
author = {Silva, Vítor and Neves, Leonardo and Souza, Renan and Coutinho, Alvaro and Oliveira, Daniel De and Mattoso, Marta},
year = {2016},
keywords = {provenance, performance analysis, scientific workflow, debugging}
}
@inproceedings{souza_provenancedata_2019,
title={Provenance Data in the Machine Learning Lifecycle in Computational Science and Engineering},
author={Souza, Renan and Azevedo, Leonardo and Lourenço, Vítor and Soares, Elton and Thiago, Raphael and Brandão, Rafael and Civitarese, Daniel and Vital Brazil, Emilio and Moreno, Marcio and Valduriez, Patrick and Mattoso, Marta and Cerqueira, Renato and A. S. Netto, Marco},
year={2019},
booktitle = {Workflows in Support of Large-Scale Science ({WORKS}) workshop co-located with the {ACM}/{IEEE} International Conference for High Performance Computing, Networking, Storage, and Analysis ({SC})},
url = {https://arxiv.org/abs/1910.04223}
}
@techreport{barbosa2016applying,
title={Applying data warehousing and big data techniques to analyze internet performance},
author={Barbosa, TMS and Souza, Renan and Cruz, SMS and Campos, MLM and Cottrell, Les},
year={2016},
institution={SLAC National Accelerator Lab., Menlo Park, CA (United States)}
}
@inproceedings{castro2015abordagem,
title={Uma Abordagem para Publica{\c{c}}{\~a}o de Dados de Proveni{\^e}ncia de Workflows Cient{\'\i}ficos na Web Sem{\^a}ntica},
author={Castro, Rachel and Souza, Renan and Silva, V{\'\i}tor and Oca{\~n}a, Kary and Oliveira, Daniel and Mattoso, Marta},
booktitle={Simp{\'o}sio Brasileiro de Banco de Dados},
year={2015}
}
@inproceedings{Souza2017Spark,
title = {Spark Scalability Analysis in a Scientific Workflow},
url = {http://sbbd.org.br/2017/wp-content/uploads/sites/3/2018/02/p288-293.pdf},
pages = {288--293},
booktitle = {Simpósio Brasileiro de Banco de Dados ({SBBD})},
author = {Souza, Renan and Silva, Vítor and Miranda, Pedro and Lima, Alexandre A B and Valduriez, Patrick and Mattoso, Marta},
year = {2017}
}
@inproceedings{Souza2016Online,
title = {Online Input Data Reduction in Scientific Workflows},
url = {https://hal.archives-ouvertes.fr/lirmm-01400538},
pages = {1--10},
booktitle = {Workflows in Support of Large-Scale Science ({WORKS}) workshop co-located with the {ACM}/{IEEE} International Conference for High Performance Computing, Networking, Storage, and Analysis ({SC})},
author = {Souza, Renan and Silva, Vítor and Coutinho, Alvaro and Valduriez, Patrick and Mattoso, Marta},
year = {2016}
}
@inproceedings{Souza2017Tracking,
location = {Denver, {CO}},
title = {Tracking of online parameter fine-tuning in scientific workflows},
booktitle = {Workflows in Support of Large-Scale Science ({WORKS}) workshop co-located with the {ACM}/{IEEE} International Conference for High Performance Computing, Networking, Storage, and Analysis ({SC})},
author = {Souza, Renan and Silva, Vítor and Camata, José and Coutinho, Alvaro and Valduriez, Patrick and Mattoso, Marta},
year = {2017},
url = {https://hal-lirmm.ccsd.cnrs.fr/lirmm-01620974}
}
@inproceedings{souza_towards_2018,
location = {Rio de Janeiro, Brazil},
title = {Towards a human-in-the-loop library for tracking hyperparameter tuning in deep learning development},
url = {http://ceur-ws.org/Vol-2170/paper12.pdf},
eventtitle = {Latin American Data Science ({LaDaS}) workshop co-located with the Very Large Database ({VLDB}) conference},
pages = {84--87},
booktitle = {Latin American Data Science ({LaDaS}) workshop co-located with the Very Large Database ({VLDB}) conference},
author = {Souza, Renan and Neves, Liliane and Azeredo, Leonardo and Luiz, Ricardo and Tady, Elaine and Cavalin, Paulo and Mattoso, Marta},
year = {2018}
}
@article{Souza2017Data,
title = {Data reduction in scientific workflows using provenance monitoring and user steering},
volume = {online},
issn = {0167-739X},
url = {https://doi.org/10.1016/j.future.2017.11.028},
doi = {10.1016/j.future.2017.11.028},
author = {Souza, Renan and Silva, Vítor and Coutinho, Alvaro L. G. A. and Valduriez, Patrick and Mattoso, Marta},
journal = {Future Generation Computer Systems},
pages = {1--34},
year = {2017}
}
@article{silva_adding_2018,
title = {Adding domain data to code profiling tools to debug workflow parallel execution},
issn = {0167-739X},
url = {https://doi.org/10.1016/j.future.2018.05.078},
doi = {10.1016/j.future.2018.05.078},
author = {Silva, Vítor and Neves, Leonardo and Souza, Renan and Coutinho, Alvaro L. G. A. and de Oliveira, Daniel and Mattoso, Marta},
journal = {Future Generation Computer Systems},
year = {2018},
pages = {624--643},
keywords = {Scientific workflow, Debugging, Provenance, Performance analysis}
}
@article{souza_keeping_2019,
title = {Keeping track of user steering actions in dynamic workflows},
volume = {99},
issn = {0167-739X},
url = {https://hal-lirmm.ccsd.cnrs.fr/lirmm-02127456},
doi = {10.1016/j.future.2019.05.011},
pages = {624--643},
journal = {Future Generation Computer Systems},
author = {Souza, Renan and Silva, Vítor and Camata, Jose J. and Coutinho, Alvaro L. G. A. and Valduriez, Patrick and Mattoso, Marta},
year = {2019},
keywords = {Dynamic workflows, Computational steering, Provenance data, Parameter tuning}
}
@inproceedings{Silva2018Capturing,
title = {Capturing Provenance for Runtime Data Analysis in Computational Science and Engineering Applications},
isbn = {978-3-319-98379-0},
series = {Lecture Notes in Computer Science ({LNCS})},
pages = {183--187},
booktitle = {International Provenance and Annotation Workshop (IPAW)},
publisher = {Springer International Publishing},
author = {Silva, Vítor and Souza, Renan and Camata, Jose and de Oliveira, Daniel and Valduriez, Patrick and Coutinho, Alvaro L. G. A. and Mattoso, Marta},
year = {2018},
url = {https://link.springer.com/chapter/10.1007/978-3-319-98379-0_15}
}
@inproceedings{Souza2018Provenance,
title = {Provenance of Dynamic Adaptations in User-Steered Dataflows},
author = {Souza, Renan and Mattoso, Marta},
isbn = {978-3-319-98379-0},
url = {https://link.springer.com/chapter/10.1007/978-3-319-98379-0_2},
series = {Lecture Notes in Computer Science ({LNCS})},
pages = {16--29},
booktitle = {International Provenance and Annotation Workshop (IPAW)},
publisher = {Springer International Publishing},
year = {2018}
}
@inproceedings{souza_efficient_2019,
title = {Efficient Runtime Capture of Multiworkflow Data Using Provenance},
url = {https://hal-lirmm.ccsd.cnrs.fr/lirmm-02265932},
pages = {1--10},
booktitle = {{IEEE} International Conference on e-Science (eScience)},
author = {Souza, Renan and Azevedo, Leonardo and Thiago, Raphael and Soares, Elton and Nery, Marcelo and Netto, Marco and Brazil, Emilio Vital and Cerqueira, Renato and Valduriez, Patrick and Mattoso, Marta},
urlyear = {2019-10-20},
year = {2019}
}
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% OTHER PUBLICATIONS (used in intro) %%%%%%%%%%%%%%%%
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@article{Mattoso2015Dynamic,
title = {Dynamic steering of {HPC} scientific workflows: a survey},
volume = {46},
rights = {thesis bib},
issn = {0167-739X},
url = {http://dx.doi.org/10.1016/j.future.2014.11.017},
doi = {10.1016/j.future.2014.11.017},
pages = {100--113},
issue = {C},
journal = {Future Generation Computer Systems},
author = {Mattoso, Marta and Dias, Jonas and Ocaña, Kary A.C.S. and Ogasawara, Eduardo and Costa, Flavio and Horta, Felipe and Silva, Vítor and de Oliveira, Daniel},
urlyear = {2015-10-29},
year = {2015},
keywords = {scientific workflows, Steering, cloud computing, Dynamic workflows, {HPC}}
}
@online{groth_w3c_2013,
title = {W3C {PROV}: an overview of the {PROV} family of documents},
rights = {thesis bib},
url = {https://www.w3.org/TR/prov-overview/},
author = {Groth, P. and Moreau, L.},
year = {2013}
}
@article{jagadish_big_2014,
title = {Big data and its technical challenges},
volume = {57},
rights = {thesis bib},
issn = {00010782},
url = {http://dl.acm.org/citation.cfm?doid=2622628.2611567},
doi = {10.1145/2611567},
pages = {86--94},
number = {7},
journal = {Communications of the {ACM}},
author = {Jagadish, H. V. and Gehrke, Johannes and Labrinidis, Alexandros and Papakonstantinou, Yannis and Patel, Jignesh M. and Ramakrishnan, Raghu and Shahabi, Cyrus},
urlyear = {2014-08-19},
year = {2014},
langid = {english}
}
@article{deelman_future_2017,
title = {The future of scientific workflows},
volume = {32},
rights = {thesis bib},
issn = {1094-3420, 1741-2846},
url = {http://journals.sagepub.com/doi/10.1177/1094342017704893},
doi = {10.1177/1094342017704893},
pages = {159--175},
number = {1},
journal = {International Journal of {HPC} Applications},
author = {Deelman, Ewa and Peterka, Tom and Altintas, Ilkay and Carothers, Christopher D and Kleese van Dam, Kerstin and Moreland, Kenneth and Parashar, Manish and Ramakrishnan, Lavanya and Taufer, Michela and Vetter, Jeffrey},
urlyear = {2017-08-11},
year = {2017},
langid = {english}
}
@article{F.daSilva2017characterization,
title = {A characterization of workflow management systems for extreme-scale applications},
volume = {75},
rights = {thesis bib},
issn = {0167739X},
doi = {10.1016/j.future.2017.02.026},
pages = {228--238},
journal = {Future Generation Computer Systems},
eprinttype = {jstor},
eprint = {2},
author = {F. da Silva, Rafael and Filgueira, Rosa and Pietri, Ilia and Jiang, Ming and Sakellariou, Rizos and Deelman, Ewa},
urlyear = {2017-08-11},
year = {2017},
langid = {english}
}
@inproceedings{F.daSilva2016Pegasus,
title = {Pegasus and {LIGO}},
booktitle = {Pegasus Blog Post},
rights = {thesis bib},
url = {https://pegasus.isi.edu/2016/02/23/pegasus-and-ligo/},
titleaddon = {Pegasus {SWMS}},
author = {F. da Silva, Rafael},
year = {2016},
langid = {english}
}
@inproceedings{ibm_research_editorial_staff_ai_2018,
title = {{AI} and the Future of Oil: An {AI} Tool to Advise Geoscientists},
rights = {thesis bib},
url = {https://www.ibm.com/blogs/research/2018/07/ai-future-oil/},
booktitle = {IBM Research Blog Post},
author = {{IBM Research}},
year = {2018}
}
@article{herschel_survey_2017,
title = {A survey on provenance: What for? What form? What from?},
volume = {26},
issn = {1066-8888},
url = {https://doi.org/10.1007/s00778-017-0486-1},
doi = {10.1007/s00778-017-0486-1},
pages = {881--906},
number = {6},
journal = {The {VLDB} Journal},
author = {Herschel, Melanie and Diestelkämper, Ralf and Ben Lahmar, Houssem},
urlyear = {2019-01-30},
year = {2017},
keywords = {Data provenance, Provenance applications, Provenance capture, Provenance requirements, Provenance types, Survey, Workflow provenance}
}
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@inproceedings{Abadi2016TensorFlow:,
author = {Abadi, Martin and Barham, Paul and Chen, Jianmin and Chen, Zhifeng and Davis, Andy and Dean, Jeffrey and Devin, Matthieu and Ghemawat, Sanjay and Irving, Geoffrey and Isard, Michael},
date = {2016},
booktitle = {OSDI}, journal = {OSDI},
pages = {265--283},
title = {TensorFlow: A System for Large-Scale Machine Learning.},
volume = {16},
year = {2016}
}
@article{Abouelhoda2012Tavaxy:,
author = {Abouelhoda, Mohamed and Issa, Shadi and Ghanem, Moustafa},
date = {2012},
doi = {10.1186/1471-2105-13-77},
issn = {1471-2105},
booktitle = {BMC Bioinformatics}, journal = {BMC Bioinformatics},
pages = {77},
title = {Tavaxy: Integrating Taverna and Galaxy workflows with cloud computing support},
volume = {13},
year = {2012}
}
@inproceedings{Abramson2008Nimrod/K:,
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