AttributeError: module 'tmap' has no attribute 'layout_from_edge_list'

[dohalloran]

Getting the following error when running the simple graph
AttributeError: module 'tmap' has no attribute 'layout_from_edge_list'

[lfnothias]

I had a similar issue when installing the tmap package from the conda-forge channel instead of the tmap channel.
If that the same reason here, the solution is to the install as recommend : conda install -c tmap tmap

[dohalloran]

that's exactly how i installed it using conda install -c tmap tmap but get that error for layout_from_edge_list

[aparente-nurix]

When I’ve had issues installing/Conda being behind on bug fixes I just installed from github. Clone the repo and use Conda develop (part of the Conda-build package) to add the repo path to your environments Conda path.

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________________________________ From: ohalloranlab <[email protected]> Sent: Tuesday, June 30, 2020 9:11:50 AM To: reymond-group/tmap <[email protected]> Cc: Subscribed <[email protected]> Subject: Re: [reymond-group/tmap] AttributeError: module 'tmap' has no attribute 'layout_from_edge_list' (#12) that's exactly how i installed it using conda install -c tmap tmap but get that error for layout_from_edge_list — You are receiving this because you are subscribed to this thread. Reply to this email directly, view it on GitHub<#12 (comment)>, or unsubscribe<https://github.com/notifications/unsubscribe-auth/AMUZ5FHPILQ35CTECV5LQHTRZIFENANCNFSM4OMMHVXQ>. Disclaimer The information contained in this communication from the sender is confidential. It is intended solely for use by the recipient and others authorized to receive it. If you are not the recipient, you are hereby notified that any disclosure, copying, distribution or taking action in relation of the contents of this information is strictly prohibited and may be unlawful.

[lfnothias]

Installing with conda install -c tmap tmap worked for me, and I was able to run the example code for layout_from_edge_list. See #11

[Lerbytech]

Interesting.... I had to rebuild tmap from scratch as conda version throwed "Wrong cpu instucrion" to consle for test examples. So, pip version is working? Cool.

[aparente-nurix]

I haven't tried pip. The latest conda build works for me on centos 7. In the past when I had issues I downloaded the repo and used:

conda develop path_to_repo

[Lerbytech]

Oh, i was wrong. Not pip but conda package. Also, I have Ubuntu, not CentOS if it may be important. Anyway - for future generations. If you have problems with package - rebuilding it can help. I did it by recreating steps from https://github.com/reymond-group/tmap/blob/master/azure-pipelines.yml

[dohalloran]

turns out the issue I was having was only on MAC OS, and it worked fine on Linux