diff --git a/dockerfiles/nf-repeatmasking/Dockerfile b/dockerfiles/nf-repeatmasking/Dockerfile index 6e606c0..66e92c9 100644 --- a/dockerfiles/nf-repeatmasking/Dockerfile +++ b/dockerfiles/nf-repeatmasking/Dockerfile @@ -1,4 +1,4 @@ -FROM ubuntu:14.04 +FROM ubuntu:16.04 MAINTAINER Rob Syme @@ -39,7 +39,7 @@ RUN wget ftp://ftp.ncbi.nlm.nih.gov/blast/executables/rmblast/2.2.28/ncbi-rmblas rm -rf ncbi-rmblastn # Install Blast+ -RUN wget ftp://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/2.6.0/ncbi-blast-2.6.0+-x64-linux.tar.gz && \ +RUN wget ftp://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/2.7.1/ncbi-blast-2.7.1+-x64-linux.tar.gz && \ tar -xzvf ncbi-blast* && \ find ncbi-blast* -type f -executable -exec mv {} bin \; && \ rm -rf ncbi-blast* @@ -125,6 +125,9 @@ RUN apt-get install -qqy genometools bioperl # Install Aragon RUN apt-get install -qqy aragorn +# This needs to be done in order for RepeatMasker to run +RUN cpan Text::Soundex + # I can't bundle the girinst RepBase libraries with the docker image, # so you'll need to get them yourself. Download them from # http://www.girinst.org/server/RepBase/protected/repeatmaskerlibraries/RepBaseRepeatMaskerEdition-20170127.tar.gz