+
- Add possibility to reduce data with center frames having a different DIT than the object frames (i.e. automatically scale object frames to DIT and ND filter of center frames before subtracting it; test with data of HD142527)
- Automatically optimize the annulus for star polarization subtraction by iterativey updating the annulus by excluding disk signal and companions etc.
- Improve computation of stellar DoLP and AoLP and corresponding uncertainties (standard error of mean) by sampling from Gaussian distributions with Monte Carlo
- Correct error in computation of photon noise for Q and U images that uses signal in Q and U rather than I_Q and I_U.
diff --git a/docs/build/html/citing.html b/docs/build/html/citing.html index 486f215..ea385cf 100644 --- a/docs/build/html/citing.html +++ b/docs/build/html/citing.html @@ -8,7 +8,7 @@ -Citing IRDAP — IRDAP 1.3.2 documentation +Citing IRDAP — IRDAP 1.3.3 documentation @@ -61,7 +61,7 @@- 1.3.2 + 1.3.3diff --git a/docs/build/html/configfile.html b/docs/build/html/configfile.html index 29ca58d..84992ca 100644 --- a/docs/build/html/configfile.html +++ b/docs/build/html/configfile.html @@ -8,7 +8,7 @@ -Configuration file — IRDAP 1.3.2 documentation +Configuration file — IRDAP 1.3.3 documentation @@ -61,7 +61,7 @@- 1.3.2 + 1.3.3diff --git a/docs/build/html/contributing.html b/docs/build/html/contributing.html index 795ae82..cf30dc8 100644 --- a/docs/build/html/contributing.html +++ b/docs/build/html/contributing.html @@ -8,7 +8,7 @@ -Contributing & issues — IRDAP 1.3.2 documentation +Contributing & issues — IRDAP 1.3.3 documentation @@ -61,7 +61,7 @@- 1.3.2 + 1.3.3diff --git a/docs/build/html/example.html b/docs/build/html/example.html index 9e238d1..b536f1a 100644 --- a/docs/build/html/example.html +++ b/docs/build/html/example.html @@ -8,7 +8,7 @@ -Example reduction — IRDAP 1.3.2 documentation +Example reduction — IRDAP 1.3.3 documentation @@ -61,7 +61,7 @@- 1.3.2 + 1.3.3diff --git a/docs/build/html/genindex.html b/docs/build/html/genindex.html index f285a29..d22e0a6 100644 --- a/docs/build/html/genindex.html +++ b/docs/build/html/genindex.html @@ -9,7 +9,7 @@ -Index — IRDAP 1.3.2 documentation +Index — IRDAP 1.3.3 documentation @@ -60,7 +60,7 @@- 1.3.2 + 1.3.3diff --git a/docs/build/html/index.html b/docs/build/html/index.html index 5a18904..9f3d899 100644 --- a/docs/build/html/index.html +++ b/docs/build/html/index.html @@ -8,7 +8,7 @@ -IRDAP — IRDAP 1.3.2 documentation +IRDAP — IRDAP 1.3.3 documentation @@ -60,7 +60,7 @@- 1.3.2 + 1.3.3diff --git a/docs/build/html/installation.html b/docs/build/html/installation.html index 82cd7bf..3f59638 100644 --- a/docs/build/html/installation.html +++ b/docs/build/html/installation.html @@ -8,7 +8,7 @@ -Installation — IRDAP 1.3.2 documentation +Installation — IRDAP 1.3.3 documentation @@ -61,7 +61,7 @@- 1.3.2 + 1.3.3diff --git a/docs/build/html/instructions.html b/docs/build/html/instructions.html index 410689a..05ed3c9 100644 --- a/docs/build/html/instructions.html +++ b/docs/build/html/instructions.html @@ -8,7 +8,7 @@ -Usage instructions — IRDAP 1.3.2 documentation +Usage instructions — IRDAP 1.3.3 documentation @@ -61,7 +61,7 @@- 1.3.2 + 1.3.3diff --git a/docs/build/html/mailinglist.html b/docs/build/html/mailinglist.html index ebbc7b1..b75d0bb 100644 --- a/docs/build/html/mailinglist.html +++ b/docs/build/html/mailinglist.html @@ -8,7 +8,7 @@ -Mailing list — IRDAP 1.3.2 documentation +Mailing list — IRDAP 1.3.3 documentation @@ -61,7 +61,7 @@- 1.3.2 + 1.3.3diff --git a/docs/build/html/objects.inv b/docs/build/html/objects.inv index 267cc33..10b8442 100644 Binary files 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& to-do","Citing IRDAP","Configuration file","Contributing & issues","Example reduction","IRDAP","Installation","Usage instructions","Mailing list"],titleterms:{acknowledg:0,adi:[3,8],advanc:3,basic:3,changelog:1,cite:2,combin:8,configur:3,content:6,contribut:4,data:8,differenti:[],exampl:5,file:3,high:1,hint:8,imag:[],instal:7,instruct:8,irdap:[2,6,7,8],issu:4,list:9,low:1,mail:9,multipl:8,nutshel:8,option:3,pdi:[3,8],polarimetr:[],post:[],pre:[3,8],prioriti:1,process:[3,8],reduct:5,run:8,set:8,test:7,usag:8}}) \ No newline at end of file diff --git a/docs/source/changelog.rst b/docs/source/changelog.rst index 078ea00..f7fc34a 100644 --- a/docs/source/changelog.rst +++ b/docs/source/changelog.rst @@ -14,6 +14,9 @@ Changelog & to-do Changelog --------- +v1.3.3 June 2021, R.G. van Holstein + - Updated code so that it correctly handles the change of the header names INS4 DROT2 BEGIN and INS4 DROT3 BEGIN to INS4 DROT2 START and INS4 DROT3 START in the FITS files + v1.3.2 January 2021, R.G. van Holstein - Corrected a bug that prevented reductions to be performed when dark and flat files are included in the raw subdirectory @@ -76,6 +79,7 @@ v0.1.2 June 2019, R.G. van Holstein: To-do high priority ------------------- + - Add possibility to reduce data with center frames having a different DIT than the object frames (i.e. automatically scale object frames to DIT and ND filter of center frames before subtracting it; test with data of HD142527) - Automatically optimize the annulus for star polarization subtraction by iterativey updating the annulus by excluding disk signal and companions etc. - Improve computation of stellar DoLP and AoLP and corresponding uncertainties (standard error of mean) by sampling from Gaussian distributions with Monte Carlo - Correct error in computation of photon noise for Q and U images that uses signal in Q and U rather than I_Q and I_U. diff --git a/irdap/irdap.py b/irdap/irdap.py index 7a22757..06658db 100644 --- a/irdap/irdap.py +++ b/irdap/irdap.py @@ -363,8 +363,15 @@ def create_overview_headers(path_raw_dir, path_overview, log=True): # If header exists, include it in overview print_array[i+1, j+2] = header_sel[header_name_sel] else: - # If header does note exist, keep element of overview empty - print_array[i+1, j+2] = '' + if header_name_sel == 'ESO INS4 DROT2 BEGIN' and 'ESO INS4 DROT2 START' in header_sel: + # If header is derotator angle at start, try alternative name as implemented in 2021 + print_array[i+1, j+2] = header_sel['ESO INS4 DROT2 START'] + elif header_name_sel == 'ESO INS4 DROT3 BEGIN' and 'ESO INS4 DROT3 START' in header_sel: + # If header is HWP angle at start, try alternative name as implemented in 2021 + print_array[i+1, j+2] = header_sel['ESO INS4 DROT3 START'] + else: + # If header does note exist, keep element of overview empty + print_array[i+1, j+2] = '' if type(print_array[i+1, j+2]) is float: # Include string with 4 decimal places @@ -3526,7 +3533,7 @@ def preprocess_data(frames_to_remove=[], printandlog('\nWrote file ' + os.path.join(path_flux_dir, name_file_root + 'reference_flux.csv') + ' showing for each FLUX-file the ratios of the transmission and DIT of the OBJECT- and FLUX-files, and the measured' + - ' star total flux in ADU of the left and right frame halves and the left + right frame halves. The file ' + + ' star total flux in ADU of the left and right frame halves and the left + right frame halves. The file' + ' also shows the reference fluxes which are the products star_total_flux * transmission_ratio * dit_ratio.' + ' To express the final images produced by IRDAP (e.g. the I_Q-, Qphi- or summed ADI images) in Jansky per arcsec^2,' + ' determine the star flux in Jansky in the corresponding filter, and multiply the final images by the factor' + @@ -4204,11 +4211,20 @@ def correct_instrumental_polarization_effects(cube_I_Q_double_sum, for i, header_sel in enumerate(header): p[i] = compute_mean_angle([header_sel['ESO TEL PARANG START'], header_sel['ESO TEL PARANG END']]) a_start[i] = header_sel['ESO TEL ALT'] - theta_hwp[i] = np.mod(compute_mean_angle([np.mod(header_sel['ESO INS4 DROT3 BEGIN'] - 152.15, 360), np.mod(header_sel['ESO INS4 DROT3 END'] - 152.15, 360)]), 180) + try: + theta_hwp[i] = np.mod(compute_mean_angle([np.mod(header_sel['ESO INS4 DROT3 BEGIN'] - 152.15, 360), np.mod(header_sel['ESO INS4 DROT3 END'] - 152.15, 360)]), 180) + except: + theta_hwp[i] = np.mod(compute_mean_angle([np.mod(header_sel['ESO INS4 DROT3 START'] - 152.15, 360), np.mod(header_sel['ESO INS4 DROT3 END'] - 152.15, 360)]), 180) if tracking_mode_used == 'FIELD': - theta_der[i] = np.mod(compute_mean_angle([header_sel['ESO INS4 DROT2 BEGIN'], header_sel['ESO INS4 DROT2 END']]), 360) + try: + theta_der[i] = np.mod(compute_mean_angle([header_sel['ESO INS4 DROT2 BEGIN'], header_sel['ESO INS4 DROT2 END']]), 360) + except: + theta_der[i] = np.mod(compute_mean_angle([header_sel['ESO INS4 DROT2 START'], header_sel['ESO INS4 DROT2 END']]), 360) elif tracking_mode_used == 'PUPIL': - theta_der[i] = np.mod(compute_mean_angle([header_sel['ESO INS4 DROT2 BEGIN'], header_sel['ESO INS4 DROT2 END']]) + 0.5*pupil_offset, 360) + try: + theta_der[i] = np.mod(compute_mean_angle([header_sel['ESO INS4 DROT2 BEGIN'], header_sel['ESO INS4 DROT2 END']]) + 0.5*pupil_offset, 360) + except: + theta_der[i] = np.mod(compute_mean_angle([header_sel['ESO INS4 DROT2 START'], header_sel['ESO INS4 DROT2 END']]) + 0.5*pupil_offset, 360) mjd[i] = header_sel['MJD-OBS'] exposure_time[i] = header_sel['ESO DET SEQ1 DIT'] NDIT[i] = header_sel['ESO DET NDIT'] diff --git a/irdap/version.py b/irdap/version.py index bd18148..1930276 100644 --- a/irdap/version.py +++ b/irdap/version.py @@ -1 +1 @@ -__version__ = '1.3.2' \ No newline at end of file +__version__ = '1.3.3' \ No newline at end of file