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always return latitude and longitude as numeric values #247

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dlebauer opened this issue Sep 23, 2021 · 1 comment
Open

always return latitude and longitude as numeric values #247

dlebauer opened this issue Sep 23, 2021 · 1 comment

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@dlebauer
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dlebauer commented Sep 23, 2021 •
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This example (w/ GBIF) works as expected:

library(mapr)
library(spocc)
spp <- c('Danaus plexippus', 'Accipiter striatus', 'Pinus contorta')
dat <- occ(spp, from = 'gbif', limit = 50, has_coords = TRUE)
map_leaflet(dat)

As does this one from iNaturalist, after changing the 'occdat' object to sp

spp <- c('Danaus plexippus', 'Accipiter striatus', 'Pinus contorta')
dat <- occ2sp(occ(spp, from = 'inat', limit = 50, has_coords = TRUE))
map_leaflet(dat)

This example doesn't work, because (lat, lon) are returned as characters:

library(mapr)
#> Warning: package 'mapr' was built under R version 4.0.5
library(spocc)
spp <- c('Danaus plexippus', 'Accipiter striatus', 'Pinus contorta')
dat <- occ(spp, from = 'inat', limit = 50, has_coords = TRUE)
map_leaflet(dat)
#> Error in validateCoords(lng, lat, funcName): addCircleMarkers requires numeric longitude/latitude values

NB: I am assuming the goal is to standardize the returned data from different sources

Created on 2021-09-22 by the reprex package (v2.0.0)

Session Info 
- Session info -----------------------------------------------------------------
 setting  value                       
 version  R version 4.0.2 (2020-06-22)
 os       Windows 10 x64              
 system   x86_64, mingw32             
 ui       RStudio                     
 language (EN)                        
 collate  English_United States.1252  
 ctype    English_United States.1252  
 tz       America/Phoenix             
 date     2021-09-22                  

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[1] C:/Users/David/Documents/lib/R
[2] C:/Program Files/R/R-4.0.2/library

 V -- Loaded and on-disk version mismatch.
 D -- DLL MD5 mismatch, broken installation.
@AMBarbosa
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I too have noticed this problem after downloading data from different sources and converting with occ2df(), where longitude and latitude are included as character (so they can't directly be plotted on a map):

spocc_dat <- occ("Daboia mauritanica", from = c("gbif", "inat", "vertnet"))
spocc_df <- occ2df(spocc_dat)
str(spocc_df)
# [. . .]
# $ longitude: chr [1:178] "5.476839" "-8.226904" "-6.620554" "3.69187" ...
# $ latitude : chr [1:178] "36.121235" "31.685136" "33.87562" "32.443245" ...
# [. . .]

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@dlebauer @AMBarbosa