Merge pull request #379 from rseng/update/software-2024-06-16

Update from update/software-2024-06-16

database/github/BobChallen/Basic-mzml-plotter/metadata.json

@@ -0,0 +1,39 @@
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+    "uid": "github/BobChallen/Basic-mzml-plotter",
+    "url": "https://github.com/BobChallen/Basic-mzml-plotter",
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+        "url": "https://github.com/BobChallen/Basic-mzml-plotter",
+        "full_name": "BobChallen/Basic-mzml-plotter",
+        "html_url": "https://github.com/BobChallen/Basic-mzml-plotter",
+        "private": false,
+        "description": "A very basic mzml file plotting program that can plot single scans, merge all scans from a file, plot the TIC, and plot an EIC of a chosen m/z value.",
+        "created_at": "2024-05-19T17:57:11Z",
+        "updated_at": "2024-06-06T09:05:02Z",
+        "clone_url": "https://github.com/BobChallen/Basic-mzml-plotter.git",
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+            "login": "BobChallen",
+            "type": "User"
+        },
+        "topics": [
+            "mass-spectrometry",
+            "massspectrometry",
+            "mzml",
+            "mzml-files",
+            "plotting-in-python"
+        ],
+        "timestamp": "2024-06-16 00:39:14.030483",
+        "avatar": "https://avatars.githubusercontent.com/u/122879668?v=4"
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+}

database/github/LeoEgidi/pivmet/metadata.json

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+        "html_url": "https://github.com/LeoEgidi/pivmet",
+        "description": "pivmet: an R package proposing pivotal methods for consensus clustering   and mixture modeling",
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+        "updated_at": "2024-06-12T15:38:31Z",
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+}

database/github/MayaWaves/mayawaves/metadata.json

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+        "full_name": "MayaWaves/mayawaves",
+        "html_url": "https://github.com/MayaWaves/mayawaves",
+        "created_at": "2023-09-01T02:45:55Z",
+        "updated_at": "2024-06-10T16:31:37Z",
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+}

database/github/RAMP-project/RAMP/metadata.json

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+        "full_name": "RAMP-project/RAMP",
+        "html_url": "https://github.com/RAMP-project/RAMP",
+        "description": "Repository of the open-source RAMP model for generating multi-energy loads profiles",
+        "created_at": "2019-02-20T17:02:32Z",
+        "updated_at": "2024-06-07T13:36:20Z",
+        "clone_url": "https://github.com/RAMP-project/RAMP.git",
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database/github/aiproteomics/aiproteomics/metadata.json

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+    "uid": "github/aiproteomics/aiproteomics",
+    "url": "https://github.com/aiproteomics/aiproteomics",
+    "data": {
+        "name": "aiproteomics",
+        "url": "https://github.com/aiproteomics/aiproteomics",
+        "full_name": "aiproteomics/aiproteomics",
+        "html_url": "https://github.com/aiproteomics/aiproteomics",
+        "private": false,
+        "description": "A package for MSMS spectral library prediction models from the field of (phospho-)proteomics, intended to facilitate the testing and comparison of different neural network architectures and existing models.",
+        "created_at": "2022-03-30T19:19:20Z",
+        "updated_at": "2024-06-07T12:24:05Z",
+        "clone_url": "https://github.com/aiproteomics/aiproteomics.git",
+        "homepage": "https://aiproteomics.github.io/aiproteomics/",
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+        "language": "Python",
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+        "license": {
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+            "name": "Apache License 2.0",
+            "spdx_id": "Apache-2.0",
+            "url": "https://api.github.com/licenses/apache-2.0",
+            "node_id": "MDc6TGljZW5zZTI="
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+        "owner": {
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+            "avatar_url": "https://avatars.githubusercontent.com/u/89943033?v=4",
+            "login": "aiproteomics",
+            "type": "Organization"
+        },
+        "topics": [
+            "msms",
+            "mass-spectrometry",
+            "deep-learning",
+            "spectral-library"
+        ],
+        "timestamp": "2024-06-16 00:39:14.481300",
+        "avatar": "https://avatars.githubusercontent.com/u/89943033?v=4"
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+}

database/github/bigraph-toolkit-suite/bigraphs.grgen-bigraphs/metadata.json

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+    "uid": "github/bigraph-toolkit-suite/bigraphs.grgen-bigraphs",
+    "url": "https://github.com/bigraph-toolkit-suite/bigraphs.grgen-bigraphs",
+    "data": {
+        "doi": "https://doi.org/10.5281/zenodo.11565998",
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+        "url": "https://github.com/bigraph-toolkit-suite/bigraphs.grgen-bigraphs",
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+        "html_url": "https://github.com/bigraph-toolkit-suite/bigraphs.grgen-bigraphs",
+        "description": "BiGGer is a transformation tool and library that translates bigraphical models and rules to GrGen.NET-compatible files. It enables bigraph rewriting using GrGen.NET.",
+        "created_at": "2023-11-06T13:50:41Z",
+        "updated_at": "2024-06-11T19:37:40Z",
+        "clone_url": "https://github.com/bigraph-toolkit-suite/bigraphs.grgen-bigraphs.git",
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+        "language": "Java",
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database/github/cblearn/cblearn/metadata.json

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+            "type": "Organization"
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+        "topics": [
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+            "embedding",
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database/github/coder/code-server/metadata.json

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+    "uid": "github/coder/code-server",
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+    "data": {
+        "title": "code\u2011server",
+        "url": "https://github.com/coder/code-server",
+        "credit": [],
+        "tags": [
+            "programming-tools",
+            "other"
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+        "description": "VS Code in the browser",
+        "name": "code-server",
+        "full_name": "coder/code-server",
+        "html_url": "https://github.com/coder/code-server",
+        "created_at": "2019-02-27T16:50:41Z",
+        "updated_at": "2024-06-15T23:22:55Z",
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+        "language": "TypeScript",
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+            "login": "coder",
+            "type": "Organization"
+        },
+        "topics": [
+            "vscode",
+            "vscode-remote",
+            "ide",
+            "remote-work",
+            "development-environment",
+            "dev-tools",
+            "browser-ide"
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+        "timestamp": "2024-06-16 00:39:42.749371",
+        "avatar": "https://avatars.githubusercontent.com/u/95932066?v=4"
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database/github/ec363/parsleyapp/metadata.json

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+        "contact": "Eszter Csibra <[email protected]>",
+        "name": "parsleyapp",
+        "url": "https://github.com/ec363/parsleyapp",
+        "full_name": "ec363/parsleyapp",
+        "html_url": "https://github.com/ec363/parsleyapp",
+        "description": "Data parsing (data extraction, tidying and metadata joining) for plate reader export files",
+        "created_at": "2023-05-15T11:42:25Z",
+        "updated_at": "2023-12-08T07:26:22Z",
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+        "timestamp": "2024-06-16 00:38:52.686358",
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