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Support scripts for "Evidence for Retrovirus Expression in LGL Leukemia"

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6 Commits
chrom_avg
chrom_avg
 
 
encodachrom
encodachrom
 
 
LICENSE
LICENSE
 
 
README.md
README.md
 
 
S1.called_insertions.sh
S1.called_insertions.sh
 
 
S1_LGL_MP.discordant_mates_dense.sh
S1_LGL_MP.discordant_mates_dense.sh
 
 
S1_LGL_MP.insert_depth.normal.sh
S1_LGL_MP.insert_depth.normal.sh
 
 
S1_LGL_MP.insert_depth.short.sh
S1_LGL_MP.insert_depth.short.sh
 
 
S1_LGL_MP.insert_depth_dense.sh
S1_LGL_MP.insert_depth_dense.sh
 
 
S1_LGL_MP.insert_depth_sparse.sh
S1_LGL_MP.insert_depth_sparse.sh
 
 
S1_LGL_MP.insert_length.sh
S1_LGL_MP.insert_length.sh
 
 
S1_LGL_MP.insert_length_sparse.sh
S1_LGL_MP.insert_length_sparse.sh
 
 
S1_LGL_MP.insert_length_sparse_or_normal_inserts_sparse.sh
S1_LGL_MP.insert_length_sparse_or_normal_inserts_sparse.sh
 
 
S1_LGL_MP.short_or_discordant.sh
S1_LGL_MP.short_or_discordant.sh
 
 
close_intervals.py
close_intervals.py
 
 
collect_tags.py
collect_tags.py
 
 
control.dat
control.dat
 
 
create_script_call_insertions_discordant.py
create_script_call_insertions_discordant.py
 
 
create_script_depth.py
create_script_depth.py
 
 
create_script_discordant_mates_dense.py
create_script_discordant_mates_dense.py
 
 
create_script_insert_depth.py
create_script_insert_depth.py
 
 
create_script_insert_depth_dense.py
create_script_insert_depth_dense.py
 
 
create_script_insert_depth_sparse.py
create_script_insert_depth_sparse.py
 
 
create_script_insert_length.py
create_script_insert_length.py
 
 
create_script_insert_length_sparse.py
create_script_insert_length_sparse.py
 
 
create_script_insert_length_sparse_or_normal_inserts_sparse.py
create_script_insert_length_sparse_or_normal_inserts_sparse.py
 
 
create_script_short_or_discordant.py
create_script_short_or_discordant.py
 
 
fill_genomic_interval_gaps.py
fill_genomic_interval_gaps.py
 
 
filtered_sam_to_intervals.py
filtered_sam_to_intervals.py
 
 
intervals_to_ucsc_catalog.py
intervals_to_ucsc_catalog.py
 
 
keep_first.py
keep_first.py
 
 
make_bigwig_info.py
make_bigwig_info.py
 
 
make_bwa_jobs.py
make_bwa_jobs.py
 
 
proximal_feature_intervals.py
proximal_feature_intervals.py
 
 
sam_reader.py
sam_reader.py
 
 

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jun2015lgl -- Support scripts for "Evidence for Retrovirus Expression in LGL Leukemia"

Aug/1/2015, Bob Harris (rsharris at bx dot psu dot edu)

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Support scripts for "Evidence for Retrovirus Expression in LGL Leukemia"

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