diff --git a/modulefiles/snakemakeslurm/5.9.1-4 b/modulefiles/snakemakeslurm/5.9.1-4 new file mode 100644 index 0000000..8921584 --- /dev/null +++ b/modulefiles/snakemakeslurm/5.9.1-4 @@ -0,0 +1,46 @@ +#%Module1.0##################################################################### +## +## snakemakeslurm +## +## https://github.com/rusalkaguy/snakemake-slurm-module +## +################################################################################ +set components [ file split [ module-info name ] ] +set prog [ lindex $components 0 ] +set snakemake-version [ lindex [ split [ lindex $components 1 ] - ] 0 ] +set script_version [ lindex [ split [ lindex $components 1 ] - ] 1 ] +set version ${snakemake-version}-${script_version} +set modroot /share/apps/ngs-ccts/${prog}/${prog}-${version} +set url https://github.com/rusalkaguy/snakemake-slurm-module + +proc ModulesHelp { } { + global version modroot + puts stderr "\tsnakemakeslurm - have snakemake submit jobs via slurm to cheaha" + puts stderr "\n\tComponents $components\n" + puts stderr "\n\tVersion $version\n" + puts stderr "\n\tmodroot $modroot\n" +} +module-whatis "Loads snakemakeslurm environment with Anaconda and Singularity support." + + +# +# load required modules +# + +# make sure to load dvctools first; if loaded second, it loads an older GCC. +module load dvctools +# UAB-HPC old module naming convention +# #module load rc/snakemake/${snakemake-version} +# load Singularity (GCC-based) first - else it will mess up Snakemake's python path +module load Singularity/3.5.2-GCC-5.4.0-2.26 +module load Anaconda3/2020.02 +module load snakemake/${snakemake-version}-foss-2018b-Python-3.6.6 +# only one version at a time +#conflict multiqc + +# +# +# Make the directories available +prepend-path PATH $modroot/ +#prepend-path MANPATH $modroot/share/man +#prepend-path PYTHONPATH odroot/lib/python2.7/site-packages