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Version 2.0.2 Modified for Zhang protocol (alternate TPP ADAPTER2, const1-3 sequences)

04 Oct 15:51
@rusalkaguy rusalkaguy
v2.0.2_zhang
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Version 2.0.2 Modified for Zhang protocol (alternate TPP ADAPTER2, const1-3 sequences) Latest
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This version changes TPP's hard-coded ADAPTER2, and const1-3 sequences, from the standard protocol to match the one used by Zhang and Niederweis.

  ADAPTER2 = "CGACCACGACC" 
  const1 = "GTCAAGTCTCGCAGATGATAAGG"
  const2 = "CTTGGTTTGGTCGTGGTCG"
  const3 = "TAACAGGTTGGCT"

This version should ONLY be used for running TPP to process .fastq files into .wig files. Statistical analysis of .wig results should always be conducted with the most recent version of TRANSIT available (> 3.0.0).

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