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releases.html
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<div class="field field-name-body field-type-text-with-summary field-label-hidden"><div class="field-items"><div class="field-item even" property="content:encoded"> <p>VectorBase is committed to a release every two months with all data freely available for public use based on NIH/NIAID policy. A list of these changes and the state of current versions are found here.<br /></p><div class="releaseNoteLarge"><img src="sites/default/files/ftp/Landing_page_icons/Data_icons/release_notes_large.png" height="150" width="145" /></div>
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<a href="release/release-vb-2019-08.html">Release VB-2019-08</a> </br>
<p align=”justify”>PopBio new data and map interface improvements, new sandfly and mosquito variation datasets, Ensembl support of all 43 VectorBase genomes, updated splice junction files in Apollo, improved assemblies for 21 Anopheles available from downloads, updates to three FAQs and the creation of a new one related to CSIRO</p> </td>
<td class="views-field views-field-field-release-date">
<span class="date-display-single" property="dc:date" datatype="xsd:dateTime" content="2019-08-28T00:00:00-04:00">August 28, 2019</span> </td>
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<tr class="even">
<td class="views-field views-field-title">
<a href="release/release-vb-2019-06.html">Release VB-2019-06</a> <p align=”justify”> three new assemblies (<i>A. coluzzii, A. funestus, I. scapularis</i>), <i>L. deliense</i> RNA gene predictions, gene metadata submissions for <i>A. aegypti</i> and <i>A. gambiae</i>, projection of variant calls in <i>A. funestus</i>, new RNAseq tracks for 25 species, PopBio fixes and improvements, three 3 Apollo videos and a new version of the workshop handout with <i>'Critical Thinking'</i> sections</p> </td>
<td class="views-field views-field-field-release-date">
<span class="date-display-single" property="dc:date" datatype="xsd:dateTime" content="2019-06-25T00:00:00-04:00">June 25, 2019</span> </td>
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<a href="release/release-vb-2019-04.html">Release VB-2019-04</a> <p style="text-align:justify">new mite genome, updates to 4 gene sets, Apollo updates, variation query migrating from BioMart to Search, <a href="glossary.html#Genotype" title="Specific alleles present in an individual's genome, or the genetic makeup of one organism." class="lexicon-term">Genotype</a> explorer to be retired, new PopBio view and data, six new tutorials</p> </td>
<td class="views-field views-field-field-release-date">
<span class="date-display-single" property="dc:date" datatype="xsd:dateTime" content="2019-04-24T00:00:00-04:00">April 24, 2019</span> </td>
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<tr class="even views-row-last">
<td class="views-field views-field-title">
<a href="release/release-vb-2019-02.html">Release VB-2019-02</a> <p style="text-align:justify"><a href="glossary.html#Gene_set" title="The set of predicted genes which represent the reference for an assembly. Gene sets contain both protein-coding and ncRNA loci. " class="lexicon-term">gene set</a> updates, RNAseq depth statistics now available, Apollo to remain open but discontinuing patch builds, variation support reminders, differential expression updates, new PopBio data & map bug fixes and improvements, Apollo update, 2019 outreach calendar</p> </td>
<td class="views-field views-field-field-release-date">
<span class="date-display-single" property="dc:date" datatype="xsd:dateTime" content="2019-02-19T00:00:00-05:00">February 19, 2019</span> </td>
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<a href="release/release-vb-2018-12.html">Release VB-2018-12</a></br>
<p align="justify">support for the <i>Aedes aegypti</i> L3 genome assembly will be discontinued, new PopBio features and new type of datasets, outreach calendar for 2019 open, Apollo to temporary stop receiving annotations, new tutorials and documentation, help desk closed for the holidays.</p> </td>
<td class="views-field views-field-field-release-date">
<span class="date-display-single" property="dc:date" datatype="xsd:dateTime" content="2018-12-12T00:00:00-05:00">December 12, 2018</span> </td>
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<a href="release/release-vb-2018-10.html">Release VB-2018-10</a> <p align="justify"><a href="glossary.html#Gene_set" title="The set of predicted genes which represent the reference for an assembly. Gene sets contain both protein-coding and ncRNA loci. " class="lexicon-term">gene set</a> updates for 24 species, new variation data for A. gambiae, new differential expression data for A. aegypti (infected with dengue and Zika), BioMart variation to be retired, new PopBio data and map interface improved, new PopBio and tour tutorials, upcoming outreach events include webinars and workshops</p> </td>
<td class="views-field views-field-field-release-date">
<span class="date-display-single" property="dc:date" datatype="xsd:dateTime" content="2018-10-25T00:00:00-04:00">October 25, 2018</span> </td>
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<a href="release/release-vb-2018-08.html">Release VB-2018-08</a> <p>new PopBio pathogen view, new PopBio abundance data, new page metrics, PhyloCFS track retired from genome browser, Search for variation data has been added, new variation tutorial, new outreach events </p>
</td>
<td class="views-field views-field-field-release-date">
<span class="date-display-single" property="dc:date" datatype="xsd:dateTime" content="2018-08-28T00:00:00-04:00">August 28, 2018</span> </td>
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<td class="views-field views-field-title">
<a href="release/release-vb-2018-06.html">Release VB-2018-06</a> <p align="justify"><a href="glossary.html#Gene_set" title="The set of predicted genes which represent the reference for an assembly. Gene sets contain both protein-coding and ncRNA loci. " class="lexicon-term">gene set</a> and <a href="glossary.html#Assembly" title="When the genome or transcriptome of a species is sequenced, typically many short random fragments are sequenced and reassembled by a computer algorithm into longer contiguous sequences called contigs. Genomic contigs may be assembled into longer sequences called scaffolds and sometimes, if the depth of sequencing is high enough, there may be enough information to assemble most of the scaffolds into chromosomes." class="lexicon-term">assembly</a> updates, Aedes variation data, updated code for Apollo in VB code site, retirement of support for AaegL3 assembly, <a href="glossary.html#BLAST" title="BLAST (Basic Local Alignment Search Tool) is a sequence comparison algorithm optimised for speed which is used to search sequence databases for optimal local alignments to a query. (Altschul et al., J Mol Biol 215:403-410; 1990)" class="lexicon-term">BLAST</a>/Apollo integration, new gene knowledge cards, PopBio map new features. </p>
</td>
<td class="views-field views-field-field-release-date">
<span class="date-display-single" property="dc:date" datatype="xsd:dateTime" content="2018-06-28T00:00:00-04:00">June 28, 2018</span> </td>
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<td class="views-field views-field-title">
<a href="release/release-vb-2018-04.html">Release VB-2018-04</a> <p style="text-align:justify">new PopBio, variation and expression data; improved PopBio features, new whole genome alignments, new tutorials and videos. </p> </td>
<td class="views-field views-field-field-release-date">
<span class="date-display-single" property="dc:date" datatype="xsd:dateTime" content="2018-04-24T00:00:00-04:00">April 24, 2018</span> </td>
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<td class="views-field views-field-title">
<a href="release/release-vb-2018-02.html">Release VB-2018-02</a> <p align="justify">Updates to 11 gene sets, new variation data from Ag1000 AR3, updated whole genome alignments, updated variation effect predictions, expression microarray probes updated, Apollo for the new <i>A. aegypti</i> genome, many new features for Advanced Search and PopBio, new tutorials.</p>
</td>
<td class="views-field views-field-field-release-date">
<span class="date-display-single" property="dc:date" datatype="xsd:dateTime" content="2018-02-21T00:00:00-05:00">February 21, 2018</span> </td>
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<a href="release/release-vb-2017-12.html">Release VB-2017-12</a> <p>New A. aegypti and A. atroparvus assemblies, new A. gambiae variation data, new STRUCTURE export option, new Find a Data Display resource in the Genome Browser, new expression and PopBio data sets.</p> </td>
<td class="views-field views-field-field-release-date">
<span class="date-display-single" property="dc:date" datatype="xsd:dateTime" content="2017-12-11T00:00:00-05:00">December 11, 2017</span> </td>
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<tr class="even">
<td class="views-field views-field-title">
<a href="release/release-vb-2017-10.html">Release VB-2017-10</a> <p align="justify">New PopBio abundance view and share link; gene sets updates due to manual annotations for 30 species; new variation, RNAseq, insecticide resistance and <a href="glossary.html#Genotype" title="Specific alleles present in an individual's genome, or the genetic makeup of one organism." class="lexicon-term">genotype</a> data; <a href="glossary.html#BLAST" title="BLAST (Basic Local Alignment Search Tool) is a sequence comparison algorithm optimised for speed which is used to search sequence databases for optimal local alignments to a query. (Altschul et al., J Mol Biol 215:403-410; 1990)" class="lexicon-term">BLAST</a> improvements, and 13 tutorial updates. </td>
<td class="views-field views-field-field-release-date">
<span class="date-display-single" property="dc:date" datatype="xsd:dateTime" content="2017-10-25T00:00:00-04:00">October 25, 2017</span> </td>
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<tr class="odd">
<td class="views-field views-field-title">
<a href="release/release-vb-2017-08.html">Release VB-2017-08</a> <p>A species <a href="glossary.html#Gene_set" title="The set of predicted genes which represent the reference for an assembly. Gene sets contain both protein-coding and ncRNA loci. " class="lexicon-term">gene set</a> update, 2 large popbio datasets updates, 3 differential expression experiments, 5 insecticide resistance studies, new tools features and capabilities, updated Submission page.</p> </td>
<td class="views-field views-field-field-release-date">
<span class="date-display-single" property="dc:date" datatype="xsd:dateTime" content="2017-08-29T00:00:00-04:00">August 29, 2017</span> </td>
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<tr class="even">
<td class="views-field views-field-title">
<a href="release/release-vb-2017-06.html">Release VB-2017-06</a> <p>4 differential expression experiments, 10 new PopBio studies, updates to protein data (alignments and domains), 12 species geneset updates, public REST API, a new tool and improvements to current tools.</p> </td>
<td class="views-field views-field-field-release-date">
<span class="date-display-single" property="dc:date" datatype="xsd:dateTime" content="2017-06-27T00:00:00-04:00">June 27, 2017</span> </td>
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<tr class="odd">
<td class="views-field views-field-title">
<a href="release/release-vb-2017-04.html">Release VB-2017-04</a> <p>This release has updated genesets for 12 species, 4 gene expression datasets, 3 popbio, and 11 insecticide resistance publications.</p>
</td>
<td class="views-field views-field-field-release-date">
<span class="date-display-single" property="dc:date" datatype="xsd:dateTime" content="2017-04-25T00:00:00-04:00">April 25, 2017</span> </td>
</tr>
<tr class="even views-row-last">
<td class="views-field views-field-title">
<a href="release/release-vb-2017-02.html">Release VB-2017-02</a> <p>This release has updated RNA gene predictions for all species, 4 gene expression datasets and 5 insecticide resistance publications.</p>
</td>
<td class="views-field views-field-field-release-date">
<span class="date-display-single" property="dc:date" datatype="xsd:dateTime" content="2017-02-21T00:00:00-05:00">February 21, 2017</span> </td>
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<td class="views-field views-field-title">
<a href="release/release-vb-2016-12.html">Release VB-2016-12</a> <p>This release has 1 updated genome <a href="glossary.html#Assembly" title="When the genome or transcriptome of a species is sequenced, typically many short random fragments are sequenced and reassembled by a computer algorithm into longer contiguous sequences called contigs. Genomic contigs may be assembled into longer sequences called scaffolds and sometimes, if the depth of sequencing is high enough, there may be enough information to assemble most of the scaffolds into chromosomes." class="lexicon-term">assembly</a>, updated <a href="glossary.html#repeat" title="Repetitive DNA in which the same sequence occurs multiple times." class="lexicon-term">repeat</a> analysis for 12 species and 7 insecticide resistance publications.</p>
</td>
<td class="views-field views-field-field-release-date">
<span class="date-display-single" property="dc:date" datatype="xsd:dateTime" content="2016-12-14T00:00:00-05:00">December 14, 2016</span> </td>
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<tr class="even">
<td class="views-field views-field-title">
<a href="release/release-vb-2016-10.html">Release VB-2016-10</a> <p>We are pleased to announce the October 2016 release of VectorBase (VB-2016-10): </p>
</td>
<td class="views-field views-field-field-release-date">
<span class="date-display-single" property="dc:date" datatype="xsd:dateTime" content="2016-10-20T00:00:00-04:00">October 20, 2016</span> </td>
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<td class="views-field views-field-title">
<a href="release/release-vb-2016-08.html">Release VB-2016-08</a> <p>We are pleased to announce the August 2016 release of VectorBase (VB-2016-08):</p> </td>
<td class="views-field views-field-field-release-date">
<span class="date-display-single" property="dc:date" datatype="xsd:dateTime" content="2016-08-25T00:00:00-04:00">August 25, 2016</span> </td>
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<tr class="even">
<td class="views-field views-field-title">
<a href="release/release-vb-2016-06.html">Release VB-2016-06</a> <p>We are pleased to announce the June 2016 release of VectorBase (VB-2016-06):</p> </td>
<td class="views-field views-field-field-release-date">
<span class="date-display-single" property="dc:date" datatype="xsd:dateTime" content="2016-06-22T00:00:00-04:00">June 22, 2016</span> </td>
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<td class="views-field views-field-title">
<a href="release/release-vb-2016-04.html">Release VB-2016-04</a> <p>We are pleased to announce the April 2016 release of VectorBase (VB-2016-04):</p> </td>
<td class="views-field views-field-field-release-date">
<span class="date-display-single" property="dc:date" datatype="xsd:dateTime" content="2016-04-28T00:00:00-04:00">April 28, 2016</span> </td>
</tr>
<tr class="even views-row-last">
<td class="views-field views-field-title">
<a href="release/release-vb-2016-02.html">Release VB-2016-02</a> <p>We are pleased to announce the February 2016 release of VectorBase (VB-2016-02):</p> </td>
<td class="views-field views-field-field-release-date">
<span class="date-display-single" property="dc:date" datatype="xsd:dateTime" content="2016-02-24T00:00:00-05:00">February 24, 2016</span> </td>
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<a href="release/release-vb-2015-12.html">Release VB-2015-12</a> <p>This release has 1 new genome, 6 geneset updates and variation data links to the Ag1000G project.</p>
</td>
<td class="views-field views-field-field-release-date">
<span class="date-display-single" property="dc:date" datatype="xsd:dateTime" content="2015-12-15T00:00:00-05:00">December 15, 2015</span> </td>
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<td class="views-field views-field-title">
<a href="release/release-vb-2015-10.html">Release VB-2015-10</a> <p>We are pleased to announce the October release of VectorBase (VB-2015-10):</p> </td>
<td class="views-field views-field-field-release-date">
<span class="date-display-single" property="dc:date" datatype="xsd:dateTime" content="2015-10-21T00:00:00-04:00">October 21, 2015</span> </td>
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<td class="views-field views-field-title">
<a href="release/release-vb-2015-08.html">Release VB-2015-08</a> <p>We dedicate this release of VectorBase to founding member Bill Gelbart - a professor, advisor, leader in genetics research, and an active member of the Genetics Society of America.</p> </td>
<td class="views-field views-field-field-release-date">
<span class="date-display-single" property="dc:date" datatype="xsd:dateTime" content="2015-08-26T00:00:00-04:00">August 26, 2015</span> </td>
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<tr class="even">
<td class="views-field views-field-title">
<a href="release/release-vb-2015-06.html">Release VB-2015-06</a> <p>We are pleased to announce the June release of VectorBase (VB-2015-06):</p> </td>
<td class="views-field views-field-field-release-date">
<span class="date-display-single" property="dc:date" datatype="xsd:dateTime" content="2015-06-24T00:00:00-04:00">June 24, 2015</span> </td>
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<td class="views-field views-field-title">
<a href="release/release-vb-2015-04.html">Release VB-2015-04</a> <p>We are pleased to announce the April release of VectorBase (VB-2015-04):</p> </td>
<td class="views-field views-field-field-release-date">
<span class="date-display-single" property="dc:date" datatype="xsd:dateTime" content="2015-04-22T00:00:00-04:00">April 22, 2015</span> </td>
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<td class="views-field views-field-title">
<a href="release/release-vb-2015-02.html">Release VB-2015-02</a> <p>We are pleased to announce the February release of VectorBase (VB-2015-02):</p> </td>
<td class="views-field views-field-field-release-date">
<span class="date-display-single" property="dc:date" datatype="xsd:dateTime" content="2015-02-19T00:00:00-05:00">February 19, 2015</span> </td>
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<a style="margin:5px 10px; border:none; text-decoration:none;" href="http://www.ebi.ac.uk/" ><img src="sites/default/files/ftp/site_logos/ebi.png" alt="EBI" style="border:none; margin:5px 0;"/></a>
<a style="margin:5px 10px; border:none; text-decoration:none;" href="http://www.imperial.ac.uk/" ><img src="sites/default/files/ftp/site_logos/imperialcollegelondon.png" alt="Imperial College" style="border:none; margin:5px 0;"/></a>
</div>
<p style="text-align:center;">This project has been funded in whole or in part with Federal funds from the National Institute of Allergy and Infectious Diseases, National Institutes of Health, Department of Health and Human Services, under Contract No. HHSN272201400029C.</p>
<p>
Bioinformatics Resource Centers for Infectious Disease:
<a href="https://www.vectorbase.org/" class="brc-postscript-link"><span class="brc-postscript-linktext">VectorBase</span></a> |
<a href="https://eupathdb.org/" class="brc-postscript-link"><span class="brc-postscript-linktext">EuPathDB</span></a> |
<a href="https://www.fludb.org/" class="brc-postscript-link"><span class="brc-postscript-linktext">IRD</span></a> |
<a href="https://patricbrc.org/" class="brc-postscript-link"><span class="brc-postscript-linktext">PATRIC</span></a> |
<a href="https://www.viprbrc.org/" class="brc-postscript-link"><span class="brc-postscript-linktext">ViPR</span></a>
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