learn.py

from os.path import exists, isdir, basename, join, splitext
import sift
from glob import glob
from numpy import zeros, resize, sqrt, histogram, hstack, vstack, savetxt, zeros_like
import scipy.cluster.vq as vq
import numpy as np
from cPickle import dump, HIGHEST_PROTOCOL
import argparse


EXTENSIONS = [".jpg", ".bmp", ".png", ".pgm", ".tif", ".tiff"]
DATASETPATH = '../dataset'
PRE_ALLOCATION_BUFFER = 1000  # for sift
HISTOGRAMS_FILE = 'visual_words_for_training_data'
IMAGE_INDEX_FILE = 'image_indexes_train'
K_THRESH = 1  # early stopping threshold for kmeans originally at 1e-5, increased for speedup
CODEBOOK_FILE = 'codebook.file'
CODEBOOK_FILE_Binary = 'codebook_b.file'


def parse_arguments():
    parser = argparse.ArgumentParser(description='train a visual bag of words model')
    parser.add_argument('-d', help='path to the dataset', required=False, default=DATASETPATH)
    args = parser.parse_args()
    return args


def get_categories(datasetpath):
    cat_paths = [files
                 for files in glob(datasetpath + "/*")
                  if isdir(files)]
    cat_paths.sort()
    cats = [basename(cat_path) for cat_path in cat_paths]
    return cats


def get_imgfiles(path):
    all_files = []
    all_files.extend([join(path, basename(fname))
                    for fname in glob(path + "/*")
                    if splitext(fname)[-1].lower() in EXTENSIONS])
    return all_files


def extractSift(input_files):
    print "extracting Sift features"
    all_features_dict = {}
    for i, fname in enumerate(input_files):
        features_fname = fname + '.sift'
        if exists(features_fname) == False:
            print "calculating sift features for", fname
            sift.process_image(fname, features_fname)
        print "gathering sift features for", fname,
        locs, descriptors = sift.read_features_from_file(features_fname)
        print descriptors.shape
        all_features_dict[fname] = descriptors
    return all_features_dict


def dict2numpy(dict):
    nkeys = len(dict)
    array = zeros((nkeys * PRE_ALLOCATION_BUFFER, 128))
    pivot = 0
    for key in dict.keys():
        value = dict[key]
        nelements = value.shape[0]
        while pivot + nelements > array.shape[0]:
            padding = zeros_like(array)
            array = vstack((array, padding))
        array[pivot:pivot + nelements] = value
        pivot += nelements
    array = resize(array, (pivot, 128))
    return array


def computeHistograms(codebook, descriptors):
    code, dist = vq.vq(descriptors, codebook)
    histogram_of_words, bin_edges = histogram(code,
                                              bins=range(codebook.shape[0] + 1),
                                              normed=True)
    return histogram_of_words


def writeHistogramsToFile(nwords, fnames, all_word_histgrams, imageidex_fname, features_fname):
    f = open (imageidex_fname, 'w')
    data_rows = zeros(nwords)
    for fname in fnames:
        histogram = all_word_histgrams[fname]
        f.write(fname.replace('D:\\Assignment1\\ImageData','')+'\n')
        if (histogram.shape[0] != nwords):  # scipy deletes empty clusters
            nwords = histogram.shape[0]
            data_rows = zeros(nwords)
            print 'nclusters have been reduced to ' + str(nwords)
        data_rows = vstack((data_rows, histogram))

    data_rows = data_rows[1:]
    fmt = ''
    for i in range(nwords):
        fmt = fmt + str(i) + ':%f '
    savetxt(features_fname, data_rows, fmt)

    f.close()
if __name__ == '__main__':
    args = parse_arguments()
    datasetpath = args.d
    print "---------------------"
    print "## loading the images and extracting the sift features"
    cats = get_categories(datasetpath)
    ncats = len(cats)
    print "searching for folders at " + datasetpath
    print "found following folders / categories:"
    print cats
    print "---------------------"
    all_files = []
    all_files_labels = {}
    all_features = {}
    cat_label = {}
    for cat, label in zip(cats, range(ncats)):
        cat_path = join(datasetpath, cat)
        cat_files = get_imgfiles(cat_path)
        cat_features = extractSift(cat_files)
        all_files = all_files + cat_files
        all_features.update(cat_features)
        cat_label[cat] = label
        for i in cat_files:
            all_files_labels[i] = label

    print "---------------------"
    print "## computing the visual words via k-means"
    all_features_array = dict2numpy(all_features)
    nfeatures = all_features_array.shape[0]
    nclusters = int(sqrt(nfeatures))
    codebook, distortion = vq.kmeans(all_features_array,
                                            nclusters,
                                            thresh=K_THRESH)

    np.savetxt(datasetpath + CODEBOOK_FILE,codebook)
    with open(datasetpath + CODEBOOK_FILE_Binary, 'wb') as f:

        dump(codebook, f, protocol=HIGHEST_PROTOCOL)

    print "---------------------"
    print "## compute the visual words histograms for each image in the database"
    all_word_histgrams = {}
    for imagefname in all_features:
        word_histgram = computeHistograms(codebook, all_features[imagefname])
        all_word_histgrams[imagefname] = word_histgram

    print "---------------------"
    print "## write the histograms to file"
    writeHistogramsToFile(nclusters,
                        all_files,
                        all_word_histgrams,
                        datasetpath + IMAGE_INDEX_FILE,
                        datasetpath + HISTOGRAMS_FILE)