build

added default shell init #13

	name: build

	on:
	push:
	branches: [ dev ]

	jobs:
	build-linux:

	runs-on: ubuntu-latest
	defaults:
	run:
	shell: bash -leo pipefail {0}
	steps:
	- uses: mamba-org/setup-micromamba@v1
	with:
	environment-file: environment.yml
	init-shell: bash
	cache-environment: true
	post-cleanup: 'all'
	- name: Install additional dependencies
	run: \|
	pip install git+https://github.com/saezlab/corneto.git@dev .
	- name: Lint with flake8
	run: \|
	# stop the build if there are Python syntax errors or undefined names
	flake8 . --count --select=E9,F63,F7,F82 --show-source --statistics
	# exit-zero treats all errors as warnings. The GitHub editor is 127 chars wide
	flake8 . --count --exit-zero --max-complexity=10 --max-line-length=127 --statistics
	- name: Test and add coverage
	run: \|
	pytest --cov --disable-warnings networkcommons

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