From e3e6b2cc836b784952531a1eaf856d1ec67a69d0 Mon Sep 17 00:00:00 2001
From: vicpaton <victor.paton@outlook.com>
Date: Fri, 6 Sep 2024 15:19:46 +0200
Subject: [PATCH] renamed vignettes

---
 docs/src/contents.rst                                       | 6 +++---
 docs/src/vignettes/{2_moon.ipynb => 4_moon.ipynb}           | 2 +-
 ...valuation_decryptm.ipynb => 5_evaluation_decryptm.ipynb} | 2 +-
 ..._phosphoactivity.ipynb => 6_cptac_phosphoactivity.ipynb} | 2 +-
 4 files changed, 6 insertions(+), 6 deletions(-)
 rename docs/src/vignettes/{2_moon.ipynb => 4_moon.ipynb} (99%)
 rename docs/src/vignettes/{3_evaluation_decryptm.ipynb => 5_evaluation_decryptm.ipynb} (99%)
 rename docs/src/vignettes/{4_cptac_phosphoactivity.ipynb => 6_cptac_phosphoactivity.ipynb} (99%)

diff --git a/docs/src/contents.rst b/docs/src/contents.rst
index 1e06cf8..43768f4 100644
--- a/docs/src/contents.rst
+++ b/docs/src/contents.rst
@@ -35,6 +35,6 @@ NetworkCommons: Table of Contents
    vignettes/1_quickstart
    vignettes/2_multiple_methods
    vignettes/3_evaluation_offt_path
-   vignettes/2_moon
-   vignettes/3_evaluation_decryptm
-   vignettes/4_cptac_phosphoactivity
\ No newline at end of file
+   vignettes/4_moon
+   vignettes/5_evaluation_decryptm
+   vignettes/6_cptac_phosphoactivity
\ No newline at end of file
diff --git a/docs/src/vignettes/2_moon.ipynb b/docs/src/vignettes/4_moon.ipynb
similarity index 99%
rename from docs/src/vignettes/2_moon.ipynb
rename to docs/src/vignettes/4_moon.ipynb
index a14a2e2..5746044 100644
--- a/docs/src/vignettes/2_moon.ipynb
+++ b/docs/src/vignettes/4_moon.ipynb
@@ -4,7 +4,7 @@
    "cell_type": "markdown",
    "metadata": {},
    "source": [
-    "# Vignette 2: MOON"
+    "# Vignette 4: recursive propagation with MOON"
    ]
   },
   {
diff --git a/docs/src/vignettes/3_evaluation_decryptm.ipynb b/docs/src/vignettes/5_evaluation_decryptm.ipynb
similarity index 99%
rename from docs/src/vignettes/3_evaluation_decryptm.ipynb
rename to docs/src/vignettes/5_evaluation_decryptm.ipynb
index 44efaf7..5eaa339 100644
--- a/docs/src/vignettes/3_evaluation_decryptm.ipynb
+++ b/docs/src/vignettes/5_evaluation_decryptm.ipynb
@@ -4,7 +4,7 @@
    "cell_type": "markdown",
    "metadata": {},
    "source": [
-    "# Vignette 3: Sensitive response to drug perturbation using phosphoproteomics"
+    "# Vignette 5: Sensitive response to drug perturbation using phosphoproteomics"
    ]
   },
   {
diff --git a/docs/src/vignettes/4_cptac_phosphoactivity.ipynb b/docs/src/vignettes/6_cptac_phosphoactivity.ipynb
similarity index 99%
rename from docs/src/vignettes/4_cptac_phosphoactivity.ipynb
rename to docs/src/vignettes/6_cptac_phosphoactivity.ipynb
index f9f038f..0b4a4b7 100644
--- a/docs/src/vignettes/4_cptac_phosphoactivity.ipynb
+++ b/docs/src/vignettes/6_cptac_phosphoactivity.ipynb
@@ -4,7 +4,7 @@
    "cell_type": "markdown",
    "metadata": {},
    "source": [
-    "# Vignette 4: Recovery of dysregulated kinases in response to cancer mutations"
+    "# Vignette 6: Recovery of dysregulated kinases in response to cancer mutations"
    ]
   },
   {