ucsc_human_cortex.md

Developing human cortex data

This dataset contains ~4200 cells from the developing human cortex sequenced with Fluidigm C1, with relatively high coverage reads.

Paper: Nowakowski et al 2018)

Contact point in HCA: Max Haeussler, Jim Kent (UCSC), data produced/analyzed by Tom Nowakowski, Aparna Bhaduri (UCSF)

Data includes

1. Count matrix of log'ed counts from HiSat2.

2. Metadata csv includes clustername, age, patient ID.

    wget http://cells.ucsc.edu/aparna/geneMatrix.tsv.gz
    wget http://cells.ucsc.edu/aparna/meta.tsv

The original FASTQ files are in dbGAP

Browser: http://cells.ucsc.edu