From 33b526893a6565737a2da307d9a9e92567764c24 Mon Sep 17 00:00:00 2001 From: samuel-marsh Date: Wed, 15 Nov 2023 14:44:31 -0500 Subject: [PATCH] fix qc vignette --- vignettes/articles/QC_Plots.Rmd | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/vignettes/articles/QC_Plots.Rmd b/vignettes/articles/QC_Plots.Rmd index 4d04da9181..da2f875dd3 100644 --- a/vignettes/articles/QC_Plots.Rmd +++ b/vignettes/articles/QC_Plots.Rmd @@ -72,7 +72,7 @@ hca_bm <- UpdateSeuratObject(hca_bm) accepted_names <- Add_Mito_Ribo_Seurat(list_species_names = TRUE) ``` -## Adding +# Adding QC Metrics ## Add Mitochondrial and Ribosomal Gene Percentages scCustomize contains easy wrapper function to automatically add both Mitochondrial and Ribosomal count percentages to meta.data slot. If you are using mouse, human, rat, zebrafish, drosophila, marmoset, or macaque data all you need to do is specify the `species` parameter. @@ -163,7 +163,7 @@ hca_bm <- Add_Cell_QC_Metrics(seurat_object = hca_bm, species = "human", add_mit -## Plotting QC Metrics +# Plotting QC Metrics scCustomize has a number of quick QC plotting options for ease of use. *NOTE: Most scCustomize plotting functions contain `...` parameter to allow user to supply any of the parameters for the original Seurat function that is being used under the hood.*