From fc7a282af3bef6e1cb816fac3b9229f536159238 Mon Sep 17 00:00:00 2001 From: samuel-marsh Date: Wed, 28 Feb 2024 15:02:18 -0500 Subject: [PATCH] build_site --- docs/404.html | 2 +- docs/LICENSE.html | 2 +- docs/articles/Cell_Bender_Functions.html | 4 +- .../figure-html/unnamed-chunk-17-1.png | Bin 147651 -> 147276 bytes .../figure-html/unnamed-chunk-19-1.png | Bin 749615 -> 728605 bytes docs/articles/Color_Palettes.html | 4 +- docs/articles/FAQ.html | 4 +- docs/articles/Gene_Expression_Plotting.html | 4 +- docs/articles/Helpers_and_Utilities.html | 100 ++-- docs/articles/Installation.html | 4 +- docs/articles/Iterative_Plotting.html | 4 +- docs/articles/LIGER_Functions.html | 4 +- .../Markers_and_Cluster_Annotation.html | 4 +- docs/articles/Misc_Functions.html | 4 +- docs/articles/Object_Conversion.html | 4 +- docs/articles/QC_Plots.html | 4 +- docs/articles/Read_and_Write_Functions.html | 4 +- docs/articles/Sequencing_QC_Plots.html | 4 +- docs/articles/Statistics.html | 458 +++++++++--------- .../figure-html/unnamed-chunk-22-1.png | Bin 123030 -> 121106 bytes docs/articles/Update_Gene_Symbols.html | 6 +- docs/articles/index.html | 2 +- docs/authors.html | 6 +- docs/index.html | 2 +- docs/news/index.html | 19 +- docs/pkgdown.yml | 2 +- docs/reference/Add_Alt_Feature_ID.html | 2 +- docs/reference/Add_CellBender_Diff.html | 2 +- docs/reference/Add_Cell_Complexity.html | 2 +- docs/reference/Add_Cell_QC_Metrics.html | 2 +- docs/reference/Add_Mito_Ribo.html | 2 +- docs/reference/Add_Pct_Diff.html | 2 +- docs/reference/Add_Sample_Meta.html | 2 +- docs/reference/Add_Top_Gene_Pct_Seurat.html | 2 +- docs/reference/Barcode_Plot.html | 2 +- docs/reference/Blank_Theme.html | 2 +- docs/reference/Case_Check.html | 2 +- docs/reference/CellBender_Diff_Plot.html | 2 +- docs/reference/CellBender_Feature_Diff.html | 2 +- docs/reference/Cell_Highlight_Plot.html | 2 +- docs/reference/Change_Delim_All.html | 2 +- docs/reference/Change_Delim_Prefix.html | 2 +- docs/reference/Change_Delim_Suffix.html | 2 +- docs/reference/CheckMatrix_scCustom.html | 2 +- docs/reference/Cluster_Highlight_Plot.html | 2 +- docs/reference/Cluster_Stats_All_Samples.html | 2 +- docs/reference/Clustered_DotPlot.html | 2 +- docs/reference/ColorBlind_Pal.html | 2 +- docs/reference/Convert_Assay.html | 2 +- docs/reference/Copy_From_GCP.html | 2 +- docs/reference/Copy_To_GCP.html | 2 +- docs/reference/Create_10X_H5.html | 2 +- .../Create_CellBender_Merged_Seurat.html | 2 +- .../Create_Cluster_Annotation_File.html | 2 +- docs/reference/Dark2_Pal.html | 2 +- docs/reference/DimPlot_All_Samples.html | 2 +- docs/reference/DimPlot_LIGER.html | 2 +- docs/reference/DimPlot_scCustom.html | 2 +- .../DiscretePalette_scCustomize.html | 2 +- docs/reference/DotPlot_scCustom.html | 2 +- docs/reference/Extract_Modality.html | 2 +- docs/reference/Extract_Sample_Meta.html | 2 +- docs/reference/Extract_Top_Markers.html | 2 +- docs/reference/FeaturePlot_DualAssay.html | 2 +- docs/reference/FeaturePlot_scCustom.html | 2 +- docs/reference/FeatureScatter_scCustom.html | 2 +- docs/reference/Feature_Present.html | 2 +- docs/reference/Fetch_Meta.html | 2 +- docs/reference/Gene_Present.html | 2 +- docs/reference/Hue_Pal.html | 2 +- docs/reference/Iterate_Barcode_Rank_Plot.html | 2 +- .../Iterate_Cluster_Highlight_Plot.html | 2 +- docs/reference/Iterate_DimPlot_bySample.html | 2 +- .../Iterate_FeaturePlot_scCustom.html | 2 +- .../Iterate_Meta_Highlight_Plot.html | 2 +- docs/reference/Iterate_PC_Loading_Plots.html | 2 +- .../Iterate_Plot_Density_Custom.html | 2 +- .../reference/Iterate_Plot_Density_Joint.html | 2 +- docs/reference/Iterate_VlnPlot_scCustom.html | 2 +- docs/reference/JCO_Four.html | 2 +- docs/reference/LIGER_Features.html | 2 +- docs/reference/Liger_to_Seurat.html | 2 +- docs/reference/MAD_Stats.html | 2 +- docs/reference/Median_Stats.html | 2 +- docs/reference/Merge_Seurat_List.html | 2 +- docs/reference/Merge_Sparse_Data_All.html | 2 +- .../Merge_Sparse_Multimodal_All.html | 2 +- docs/reference/Meta_Highlight_Plot.html | 2 +- docs/reference/Meta_Numeric.html | 2 +- docs/reference/Meta_Present.html | 2 +- docs/reference/Meta_Remove_Seurat.html | 2 +- docs/reference/Move_Legend.html | 2 +- docs/reference/NavyAndOrange.html | 2 +- docs/reference/PC_Plotting.html | 2 +- docs/reference/PalettePlot.html | 2 +- docs/reference/Percent_Expressing.html | 2 +- docs/reference/Plot_Cells_per_Sample.html | 2 +- docs/reference/Plot_Density_Custom.html | 7 +- docs/reference/Plot_Density_Joint_Only.html | 7 +- docs/reference/Plot_Median_Genes.html | 2 +- docs/reference/Plot_Median_Mito.html | 2 +- docs/reference/Plot_Median_Other.html | 2 +- docs/reference/Plot_Median_UMIs.html | 2 +- docs/reference/Pull_Cluster_Annotation.html | 2 +- docs/reference/Pull_Directory_List.html | 2 +- docs/reference/QC_Histogram.html | 2 +- docs/reference/QC_Plot_GenevsFeature.html | 2 +- docs/reference/QC_Plot_UMIvsFeature.html | 2 +- docs/reference/QC_Plot_UMIvsGene.html | 2 +- docs/reference/QC_Plots_Combined_Vln.html | 2 +- docs/reference/QC_Plots_Complexity.html | 2 +- docs/reference/QC_Plots_Feature.html | 2 +- docs/reference/QC_Plots_Genes.html | 2 +- docs/reference/QC_Plots_Mito.html | 2 +- docs/reference/QC_Plots_UMIs.html | 2 +- docs/reference/Read10X_GEO.html | 2 +- docs/reference/Read10X_Multi_Directory.html | 2 +- docs/reference/Read10X_h5_GEO.html | 2 +- .../reference/Read10X_h5_Multi_Directory.html | 2 +- docs/reference/Read_CellBender_h5_Mat.html | 2 +- .../Read_CellBender_h5_Multi_Directory.html | 2 +- .../Read_CellBender_h5_Multi_File.html | 2 +- docs/reference/Read_GEO_Delim.html | 2 +- docs/reference/Read_Metrics_10X.html | 2 +- docs/reference/Reduction_Loading_Present.html | 2 +- docs/reference/Rename_Clusters.html | 2 +- docs/reference/Replace_Suffix.html | 2 +- .../Seq_QC_Plot_Alignment_Combined.html | 2 +- docs/reference/Seq_QC_Plot_Antisense.html | 2 +- .../reference/Seq_QC_Plot_Basic_Combined.html | 2 +- docs/reference/Seq_QC_Plot_Exonic.html | 2 +- docs/reference/Seq_QC_Plot_Genes.html | 2 +- docs/reference/Seq_QC_Plot_Genome.html | 2 +- docs/reference/Seq_QC_Plot_Intergenic.html | 2 +- docs/reference/Seq_QC_Plot_Intronic.html | 2 +- docs/reference/Seq_QC_Plot_Number_Cells.html | 2 +- .../reference/Seq_QC_Plot_Reads_in_Cells.html | 2 +- .../reference/Seq_QC_Plot_Reads_per_Cell.html | 2 +- docs/reference/Seq_QC_Plot_Saturation.html | 2 +- docs/reference/Seq_QC_Plot_Total_Genes.html | 2 +- docs/reference/Seq_QC_Plot_Transcriptome.html | 2 +- docs/reference/Seq_QC_Plot_UMIs.html | 2 +- docs/reference/Setup_scRNAseq_Project.html | 2 +- docs/reference/Single_Color_Palette.html | 2 +- docs/reference/Split_Layers.html | 2 +- docs/reference/Split_Vector.html | 2 +- docs/reference/Stacked_VlnPlot.html | 2 +- docs/reference/Store_Misc_Info_Seurat.html | 2 +- docs/reference/Store_Palette_Seurat.html | 2 +- docs/reference/Top_Genes_Factor.html | 2 +- docs/reference/UnRotate_X.html | 2 +- docs/reference/Updated_HGNC_Symbols.html | 2 +- .../VariableFeaturePlot_scCustom.html | 2 +- .../Variable_Features_ALL_LIGER.html | 2 +- docs/reference/VlnPlot_scCustom.html | 2 +- docs/reference/as.LIGER.html | 2 +- docs/reference/as.Seurat.html | 2 +- docs/reference/as.anndata.html | 2 +- docs/reference/deprecated.html | 2 +- docs/reference/ensembl_mito_id.html | 2 +- docs/reference/ensembl_ribo_id.html | 2 +- docs/reference/ieg_gene_list.html | 2 +- docs/reference/index.html | 2 +- docs/reference/msigdb_qc_gene_list.html | 2 +- docs/reference/plotFactors_scCustom.html | 2 +- docs/reference/reexports.html | 2 +- docs/reference/scCustomize-package.html | 2 +- docs/reference/scCustomize_Palette.html | 2 +- docs/reference/theme_ggprism_mod.html | 2 +- docs/reference/viridis_shortcut.html | 2 +- inst/pkgdown.yml | 2 +- 171 files changed, 482 insertions(+), 469 deletions(-) diff --git a/docs/404.html b/docs/404.html index 5c6e71a40f..bfd4e54a15 100644 --- a/docs/404.html +++ b/docs/404.html @@ -32,7 +32,7 @@ scCustomize - 2.1.1 + 2.1.2 diff --git a/docs/LICENSE.html b/docs/LICENSE.html index 6d508d7eeb..808898af0b 100644 --- a/docs/LICENSE.html +++ b/docs/LICENSE.html @@ -17,7 +17,7 @@ scCustomize - 2.1.1 + 2.1.2 diff --git a/docs/articles/Cell_Bender_Functions.html b/docs/articles/Cell_Bender_Functions.html index 0227a2a4fe..4d6c4fdeb1 100644 --- a/docs/articles/Cell_Bender_Functions.html +++ b/docs/articles/Cell_Bender_Functions.html @@ -33,7 +33,7 @@ scCustomize - 2.1.1 + 2.1.2 @@ -136,7 +136,7 @@ @@ -135,7 +135,7 @@ @@ -135,7 +135,7 @@ @@ -135,7 +135,7 @@ @@ -136,7 +136,7 @@ @@ -135,7 +135,7 @@ @@ -135,7 +135,7 @@ @@ -135,7 +135,7 @@ @@ -137,7 +137,7 @@

Marker Identification & Cluster Annotation Helpers

-

Compiled: February 23, +

Compiled: February 28, 2024

Source: vignettes/articles/Markers_and_Cluster_Annotation.Rmd diff --git a/docs/articles/Misc_Functions.html b/docs/articles/Misc_Functions.html index ec52f9af19..e0d7db210e 100644 --- a/docs/articles/Misc_Functions.html +++ b/docs/articles/Misc_Functions.html @@ -33,7 +33,7 @@ scCustomize - 2.1.1 + 2.1.2 @@ -135,7 +135,7 @@ @@ -136,7 +136,7 @@ @@ -136,7 +136,7 @@ @@ -135,7 +135,7 @@ @@ -136,7 +136,7 @@ @@ -136,7 +136,7 @@ @@ -136,7 +136,7 @@

Examining the Results diff --git a/docs/articles/index.html b/docs/articles/index.html index e9121a59a3..0fc34f7fc7 100644 --- a/docs/articles/index.html +++ b/docs/articles/index.html @@ -17,7 +17,7 @@ scCustomize - 2.1.1 + 2.1.2

diff --git a/docs/authors.html b/docs/authors.html index 1eb7772bfa..384ef8eb91 100644 --- a/docs/authors.html +++ b/docs/authors.html @@ -17,7 +17,7 @@ scCustomize - 2.1.1 + 2.1.2 @@ -138,13 +138,13 @@

Citation

Marsh S (2024). scCustomize: Custom Visualizations & Functions for Streamlined Analyses of Single Cell Sequencing. -R package version 2.1.1, https://samuel-marsh.github.io/scCustomize/, https://doi.org/10.5281/zenodo.5706431, https://github.com/samuel-marsh/scCustomize. +R package version 2.1.2, https://samuel-marsh.github.io/scCustomize/, https://doi.org/10.5281/zenodo.5706431, https://github.com/samuel-marsh/scCustomize.

@Manual{,
   title = {scCustomize: Custom Visualizations & Functions for Streamlined Analyses of Single Cell Sequencing},
   author = {Samuel Marsh},
   year = {2024},
-  note = {R package version 2.1.1, https://samuel-marsh.github.io/scCustomize/, https://doi.org/10.5281/zenodo.5706431},
+  note = {R package version 2.1.2, https://samuel-marsh.github.io/scCustomize/, https://doi.org/10.5281/zenodo.5706431},
   url = {https://github.com/samuel-marsh/scCustomize},
 }
diff --git a/docs/index.html b/docs/index.html index 8e45161a9b..e767ecf833 100644 --- a/docs/index.html +++ b/docs/index.html @@ -33,7 +33,7 @@ scCustomize - 2.1.1 + 2.1.2 diff --git a/docs/news/index.html b/docs/news/index.html index 8a1ae40d43..83f22e7b5b 100644 --- a/docs/news/index.html +++ b/docs/news/index.html @@ -17,7 +17,7 @@ scCustomize - 2.1.1 + 2.1.2 @@ -111,7 +111,22 @@

Changelog

- + +
+

Added

+
  • None.
  • +
+
+

Changed

+
  • None.
  • +
+
+

Fixes

+
  • Fixed breaking bug (and CRAN check errors) in Plot_Density_Custom and Plot_Density_Joint_Only due to error in Nebulosa following ggplot2 v3.5.0 update. Functionality will be restored when Nebulosa package is updated.
  • +
+
+
+

Added

  • None.
  • diff --git a/docs/pkgdown.yml b/docs/pkgdown.yml index fc4cea9e40..084ef83a15 100644 --- a/docs/pkgdown.yml +++ b/docs/pkgdown.yml @@ -18,7 +18,7 @@ articles: Sequencing_QC_Plots: Sequencing_QC_Plots.html Statistics: Statistics.html Update_Gene_Symbols: Update_Gene_Symbols.html -last_built: 2024-02-24T00:19Z +last_built: 2024-02-28T19:49Z urls: reference: https://samuel-marsh.github.io/scCustomize/reference article: https://samuel-marsh.github.io/scCustomize/articles diff --git a/docs/reference/Add_Alt_Feature_ID.html b/docs/reference/Add_Alt_Feature_ID.html index 4715361d43..5461f0b3bb 100644 --- a/docs/reference/Add_Alt_Feature_ID.html +++ b/docs/reference/Add_Alt_Feature_ID.html @@ -17,7 +17,7 @@ scCustomize - 2.1.1 + 2.1.2
diff --git a/docs/reference/Add_CellBender_Diff.html b/docs/reference/Add_CellBender_Diff.html index 55279ba1f1..cecc414cfa 100644 --- a/docs/reference/Add_CellBender_Diff.html +++ b/docs/reference/Add_CellBender_Diff.html @@ -17,7 +17,7 @@ scCustomize - 2.1.1 + 2.1.2
diff --git a/docs/reference/Add_Cell_Complexity.html b/docs/reference/Add_Cell_Complexity.html index 94ce853c90..93166fa96f 100644 --- a/docs/reference/Add_Cell_Complexity.html +++ b/docs/reference/Add_Cell_Complexity.html @@ -17,7 +17,7 @@ scCustomize - 2.1.1 + 2.1.2 diff --git a/docs/reference/Add_Cell_QC_Metrics.html b/docs/reference/Add_Cell_QC_Metrics.html index 4e0f02c067..4da5ecbbea 100644 --- a/docs/reference/Add_Cell_QC_Metrics.html +++ b/docs/reference/Add_Cell_QC_Metrics.html @@ -17,7 +17,7 @@ scCustomize - 2.1.1 + 2.1.2 diff --git a/docs/reference/Add_Mito_Ribo.html b/docs/reference/Add_Mito_Ribo.html index 8f7b1ddb10..224c2d6e53 100644 --- a/docs/reference/Add_Mito_Ribo.html +++ b/docs/reference/Add_Mito_Ribo.html @@ -18,7 +18,7 @@ scCustomize - 2.1.1 + 2.1.2 diff --git a/docs/reference/Add_Pct_Diff.html b/docs/reference/Add_Pct_Diff.html index 697a00d6ef..55fd6f9c55 100644 --- a/docs/reference/Add_Pct_Diff.html +++ b/docs/reference/Add_Pct_Diff.html @@ -17,7 +17,7 @@ scCustomize - 2.1.1 + 2.1.2 diff --git a/docs/reference/Add_Sample_Meta.html b/docs/reference/Add_Sample_Meta.html index ad95f93005..337573deea 100644 --- a/docs/reference/Add_Sample_Meta.html +++ b/docs/reference/Add_Sample_Meta.html @@ -17,7 +17,7 @@ scCustomize - 2.1.1 + 2.1.2 diff --git a/docs/reference/Add_Top_Gene_Pct_Seurat.html b/docs/reference/Add_Top_Gene_Pct_Seurat.html index 7fd3daa59e..b675c1d3ab 100644 --- a/docs/reference/Add_Top_Gene_Pct_Seurat.html +++ b/docs/reference/Add_Top_Gene_Pct_Seurat.html @@ -17,7 +17,7 @@ scCustomize - 2.1.1 + 2.1.2 diff --git a/docs/reference/Barcode_Plot.html b/docs/reference/Barcode_Plot.html index 6a690933cd..fd53fd3344 100644 --- a/docs/reference/Barcode_Plot.html +++ b/docs/reference/Barcode_Plot.html @@ -17,7 +17,7 @@ scCustomize - 2.1.1 + 2.1.2 diff --git a/docs/reference/Blank_Theme.html b/docs/reference/Blank_Theme.html index 7666e863d9..74397e5d16 100644 --- a/docs/reference/Blank_Theme.html +++ b/docs/reference/Blank_Theme.html @@ -17,7 +17,7 @@ scCustomize - 2.1.1 + 2.1.2 diff --git a/docs/reference/Case_Check.html b/docs/reference/Case_Check.html index 242c6e181e..d72ddcb92a 100644 --- a/docs/reference/Case_Check.html +++ b/docs/reference/Case_Check.html @@ -20,7 +20,7 @@ scCustomize - 2.1.1 + 2.1.2 diff --git a/docs/reference/CellBender_Diff_Plot.html b/docs/reference/CellBender_Diff_Plot.html index 82b3d6fbe0..2d49dd5365 100644 --- a/docs/reference/CellBender_Diff_Plot.html +++ b/docs/reference/CellBender_Diff_Plot.html @@ -17,7 +17,7 @@ scCustomize - 2.1.1 + 2.1.2 diff --git a/docs/reference/CellBender_Feature_Diff.html b/docs/reference/CellBender_Feature_Diff.html index 337133f46f..7dd3c88ea8 100644 --- a/docs/reference/CellBender_Feature_Diff.html +++ b/docs/reference/CellBender_Feature_Diff.html @@ -18,7 +18,7 @@ scCustomize - 2.1.1 + 2.1.2 diff --git a/docs/reference/Cell_Highlight_Plot.html b/docs/reference/Cell_Highlight_Plot.html index 81a807a140..4165b6a765 100644 --- a/docs/reference/Cell_Highlight_Plot.html +++ b/docs/reference/Cell_Highlight_Plot.html @@ -17,7 +17,7 @@ scCustomize - 2.1.1 + 2.1.2 diff --git a/docs/reference/Change_Delim_All.html b/docs/reference/Change_Delim_All.html index b6b65616e5..20f2b0791f 100644 --- a/docs/reference/Change_Delim_All.html +++ b/docs/reference/Change_Delim_All.html @@ -17,7 +17,7 @@ scCustomize - 2.1.1 + 2.1.2 diff --git a/docs/reference/Change_Delim_Prefix.html b/docs/reference/Change_Delim_Prefix.html index bc7bd31da9..0aec866ccf 100644 --- a/docs/reference/Change_Delim_Prefix.html +++ b/docs/reference/Change_Delim_Prefix.html @@ -17,7 +17,7 @@ scCustomize - 2.1.1 + 2.1.2 diff --git a/docs/reference/Change_Delim_Suffix.html b/docs/reference/Change_Delim_Suffix.html index 485eb5c50b..fcc4e51485 100644 --- a/docs/reference/Change_Delim_Suffix.html +++ b/docs/reference/Change_Delim_Suffix.html @@ -17,7 +17,7 @@ scCustomize - 2.1.1 + 2.1.2 diff --git a/docs/reference/CheckMatrix_scCustom.html b/docs/reference/CheckMatrix_scCustom.html index 103922b6a2..1c15334045 100644 --- a/docs/reference/CheckMatrix_scCustom.html +++ b/docs/reference/CheckMatrix_scCustom.html @@ -17,7 +17,7 @@ scCustomize - 2.1.1 + 2.1.2 diff --git a/docs/reference/Cluster_Highlight_Plot.html b/docs/reference/Cluster_Highlight_Plot.html index 223fc827e9..ce7547433c 100644 --- a/docs/reference/Cluster_Highlight_Plot.html +++ b/docs/reference/Cluster_Highlight_Plot.html @@ -17,7 +17,7 @@ scCustomize - 2.1.1 + 2.1.2 diff --git a/docs/reference/Cluster_Stats_All_Samples.html b/docs/reference/Cluster_Stats_All_Samples.html index d09b880dde..3bb085af27 100644 --- a/docs/reference/Cluster_Stats_All_Samples.html +++ b/docs/reference/Cluster_Stats_All_Samples.html @@ -17,7 +17,7 @@ scCustomize - 2.1.1 + 2.1.2 diff --git a/docs/reference/Clustered_DotPlot.html b/docs/reference/Clustered_DotPlot.html index 668d2e0c07..61bc48e881 100644 --- a/docs/reference/Clustered_DotPlot.html +++ b/docs/reference/Clustered_DotPlot.html @@ -17,7 +17,7 @@ scCustomize - 2.1.1 + 2.1.2 diff --git a/docs/reference/ColorBlind_Pal.html b/docs/reference/ColorBlind_Pal.html index c39b7a635b..ed8b5278d9 100644 --- a/docs/reference/ColorBlind_Pal.html +++ b/docs/reference/ColorBlind_Pal.html @@ -17,7 +17,7 @@ scCustomize - 2.1.1 + 2.1.2 diff --git a/docs/reference/Convert_Assay.html b/docs/reference/Convert_Assay.html index cad4b65976..56e0782fc1 100644 --- a/docs/reference/Convert_Assay.html +++ b/docs/reference/Convert_Assay.html @@ -17,7 +17,7 @@ scCustomize - 2.1.1 + 2.1.2 diff --git a/docs/reference/Copy_From_GCP.html b/docs/reference/Copy_From_GCP.html index d134d79a14..9102a147fb 100644 --- a/docs/reference/Copy_From_GCP.html +++ b/docs/reference/Copy_From_GCP.html @@ -17,7 +17,7 @@ scCustomize - 2.1.1 + 2.1.2 diff --git a/docs/reference/Copy_To_GCP.html b/docs/reference/Copy_To_GCP.html index 0186e7c38b..b3c73340d4 100644 --- a/docs/reference/Copy_To_GCP.html +++ b/docs/reference/Copy_To_GCP.html @@ -17,7 +17,7 @@ scCustomize - 2.1.1 + 2.1.2 diff --git a/docs/reference/Create_10X_H5.html b/docs/reference/Create_10X_H5.html index e5c23c8a9d..afc1f86532 100644 --- a/docs/reference/Create_10X_H5.html +++ b/docs/reference/Create_10X_H5.html @@ -18,7 +18,7 @@ scCustomize - 2.1.1 + 2.1.2 diff --git a/docs/reference/Create_CellBender_Merged_Seurat.html b/docs/reference/Create_CellBender_Merged_Seurat.html index 996af3098c..7a9ca1c1bd 100644 --- a/docs/reference/Create_CellBender_Merged_Seurat.html +++ b/docs/reference/Create_CellBender_Merged_Seurat.html @@ -18,7 +18,7 @@ scCustomize - 2.1.1 + 2.1.2 diff --git a/docs/reference/Create_Cluster_Annotation_File.html b/docs/reference/Create_Cluster_Annotation_File.html index d1abc03c23..169649ffce 100644 --- a/docs/reference/Create_Cluster_Annotation_File.html +++ b/docs/reference/Create_Cluster_Annotation_File.html @@ -17,7 +17,7 @@ scCustomize - 2.1.1 + 2.1.2 diff --git a/docs/reference/Dark2_Pal.html b/docs/reference/Dark2_Pal.html index 90ded61049..a63fb961bc 100644 --- a/docs/reference/Dark2_Pal.html +++ b/docs/reference/Dark2_Pal.html @@ -17,7 +17,7 @@ scCustomize - 2.1.1 + 2.1.2 diff --git a/docs/reference/DimPlot_All_Samples.html b/docs/reference/DimPlot_All_Samples.html index 0d3d1089f2..f6d92ae32f 100644 --- a/docs/reference/DimPlot_All_Samples.html +++ b/docs/reference/DimPlot_All_Samples.html @@ -17,7 +17,7 @@ scCustomize - 2.1.1 + 2.1.2 diff --git a/docs/reference/DimPlot_LIGER.html b/docs/reference/DimPlot_LIGER.html index c0fa6b56e4..77ac12eac3 100644 --- a/docs/reference/DimPlot_LIGER.html +++ b/docs/reference/DimPlot_LIGER.html @@ -17,7 +17,7 @@ scCustomize - 2.1.1 + 2.1.2 diff --git a/docs/reference/DimPlot_scCustom.html b/docs/reference/DimPlot_scCustom.html index 80445aa7d0..f8ce058692 100644 --- a/docs/reference/DimPlot_scCustom.html +++ b/docs/reference/DimPlot_scCustom.html @@ -17,7 +17,7 @@ scCustomize - 2.1.1 + 2.1.2 diff --git a/docs/reference/DiscretePalette_scCustomize.html b/docs/reference/DiscretePalette_scCustomize.html index cc44912128..9ec2eff719 100644 --- a/docs/reference/DiscretePalette_scCustomize.html +++ b/docs/reference/DiscretePalette_scCustomize.html @@ -17,7 +17,7 @@ scCustomize - 2.1.1 + 2.1.2 diff --git a/docs/reference/DotPlot_scCustom.html b/docs/reference/DotPlot_scCustom.html index a2e6c10325..2736efbd90 100644 --- a/docs/reference/DotPlot_scCustom.html +++ b/docs/reference/DotPlot_scCustom.html @@ -17,7 +17,7 @@ scCustomize - 2.1.1 + 2.1.2 diff --git a/docs/reference/Extract_Modality.html b/docs/reference/Extract_Modality.html index ccf5c92546..0154f5790e 100644 --- a/docs/reference/Extract_Modality.html +++ b/docs/reference/Extract_Modality.html @@ -18,7 +18,7 @@ scCustomize - 2.1.1 + 2.1.2 diff --git a/docs/reference/Extract_Sample_Meta.html b/docs/reference/Extract_Sample_Meta.html index ee33134af7..eb13b3e5d1 100644 --- a/docs/reference/Extract_Sample_Meta.html +++ b/docs/reference/Extract_Sample_Meta.html @@ -18,7 +18,7 @@ scCustomize - 2.1.1 + 2.1.2 diff --git a/docs/reference/Extract_Top_Markers.html b/docs/reference/Extract_Top_Markers.html index 195042a50e..b75aa0d9e0 100644 --- a/docs/reference/Extract_Top_Markers.html +++ b/docs/reference/Extract_Top_Markers.html @@ -18,7 +18,7 @@ scCustomize - 2.1.1 + 2.1.2 diff --git a/docs/reference/FeaturePlot_DualAssay.html b/docs/reference/FeaturePlot_DualAssay.html index 650120b084..4a00361ca8 100644 --- a/docs/reference/FeaturePlot_DualAssay.html +++ b/docs/reference/FeaturePlot_DualAssay.html @@ -18,7 +18,7 @@ scCustomize - 2.1.1 + 2.1.2 diff --git a/docs/reference/FeaturePlot_scCustom.html b/docs/reference/FeaturePlot_scCustom.html index f966a24e2a..3f7be41ef1 100644 --- a/docs/reference/FeaturePlot_scCustom.html +++ b/docs/reference/FeaturePlot_scCustom.html @@ -17,7 +17,7 @@ scCustomize - 2.1.1 + 2.1.2 diff --git a/docs/reference/FeatureScatter_scCustom.html b/docs/reference/FeatureScatter_scCustom.html index e817ae90b3..633d4ba013 100644 --- a/docs/reference/FeatureScatter_scCustom.html +++ b/docs/reference/FeatureScatter_scCustom.html @@ -17,7 +17,7 @@ scCustomize - 2.1.1 + 2.1.2 diff --git a/docs/reference/Feature_Present.html b/docs/reference/Feature_Present.html index c56395342f..12e69ae740 100644 --- a/docs/reference/Feature_Present.html +++ b/docs/reference/Feature_Present.html @@ -18,7 +18,7 @@ scCustomize - 2.1.1 + 2.1.2 diff --git a/docs/reference/Fetch_Meta.html b/docs/reference/Fetch_Meta.html index 4ccf7f5c05..12f376640a 100644 --- a/docs/reference/Fetch_Meta.html +++ b/docs/reference/Fetch_Meta.html @@ -17,7 +17,7 @@ scCustomize - 2.1.1 + 2.1.2 diff --git a/docs/reference/Gene_Present.html b/docs/reference/Gene_Present.html index e07df2f01c..177d0ebb94 100644 --- a/docs/reference/Gene_Present.html +++ b/docs/reference/Gene_Present.html @@ -18,7 +18,7 @@ scCustomize - 2.1.1 + 2.1.2 diff --git a/docs/reference/Hue_Pal.html b/docs/reference/Hue_Pal.html index 817c458e56..380c20e796 100644 --- a/docs/reference/Hue_Pal.html +++ b/docs/reference/Hue_Pal.html @@ -17,7 +17,7 @@ scCustomize - 2.1.1 + 2.1.2 diff --git a/docs/reference/Iterate_Barcode_Rank_Plot.html b/docs/reference/Iterate_Barcode_Rank_Plot.html index 65ac63373c..2a7478f11a 100644 --- a/docs/reference/Iterate_Barcode_Rank_Plot.html +++ b/docs/reference/Iterate_Barcode_Rank_Plot.html @@ -17,7 +17,7 @@ scCustomize - 2.1.1 + 2.1.2 diff --git a/docs/reference/Iterate_Cluster_Highlight_Plot.html b/docs/reference/Iterate_Cluster_Highlight_Plot.html index 80c8b5ccc0..4a314ce128 100644 --- a/docs/reference/Iterate_Cluster_Highlight_Plot.html +++ b/docs/reference/Iterate_Cluster_Highlight_Plot.html @@ -18,7 +18,7 @@ scCustomize - 2.1.1 + 2.1.2 diff --git a/docs/reference/Iterate_DimPlot_bySample.html b/docs/reference/Iterate_DimPlot_bySample.html index 8df04abb32..eb4d2ed5bb 100644 --- a/docs/reference/Iterate_DimPlot_bySample.html +++ b/docs/reference/Iterate_DimPlot_bySample.html @@ -17,7 +17,7 @@ scCustomize - 2.1.1 + 2.1.2 diff --git a/docs/reference/Iterate_FeaturePlot_scCustom.html b/docs/reference/Iterate_FeaturePlot_scCustom.html index 48225b3efc..d0dc543082 100644 --- a/docs/reference/Iterate_FeaturePlot_scCustom.html +++ b/docs/reference/Iterate_FeaturePlot_scCustom.html @@ -17,7 +17,7 @@ scCustomize - 2.1.1 + 2.1.2 diff --git a/docs/reference/Iterate_Meta_Highlight_Plot.html b/docs/reference/Iterate_Meta_Highlight_Plot.html index 3a0c7b14ef..8c7c1f656a 100644 --- a/docs/reference/Iterate_Meta_Highlight_Plot.html +++ b/docs/reference/Iterate_Meta_Highlight_Plot.html @@ -17,7 +17,7 @@ scCustomize - 2.1.1 + 2.1.2 diff --git a/docs/reference/Iterate_PC_Loading_Plots.html b/docs/reference/Iterate_PC_Loading_Plots.html index 3c340d0489..639e3bf6c6 100644 --- a/docs/reference/Iterate_PC_Loading_Plots.html +++ b/docs/reference/Iterate_PC_Loading_Plots.html @@ -17,7 +17,7 @@ scCustomize - 2.1.1 + 2.1.2 diff --git a/docs/reference/Iterate_Plot_Density_Custom.html b/docs/reference/Iterate_Plot_Density_Custom.html index 929beceec9..aa38752e81 100644 --- a/docs/reference/Iterate_Plot_Density_Custom.html +++ b/docs/reference/Iterate_Plot_Density_Custom.html @@ -17,7 +17,7 @@ scCustomize - 2.1.1 + 2.1.2 diff --git a/docs/reference/Iterate_Plot_Density_Joint.html b/docs/reference/Iterate_Plot_Density_Joint.html index ad31a40926..d04b2674ce 100644 --- a/docs/reference/Iterate_Plot_Density_Joint.html +++ b/docs/reference/Iterate_Plot_Density_Joint.html @@ -17,7 +17,7 @@ scCustomize - 2.1.1 + 2.1.2 diff --git a/docs/reference/Iterate_VlnPlot_scCustom.html b/docs/reference/Iterate_VlnPlot_scCustom.html index 243783c7c5..28f7ccc150 100644 --- a/docs/reference/Iterate_VlnPlot_scCustom.html +++ b/docs/reference/Iterate_VlnPlot_scCustom.html @@ -17,7 +17,7 @@ scCustomize - 2.1.1 + 2.1.2 diff --git a/docs/reference/JCO_Four.html b/docs/reference/JCO_Four.html index 402792c16f..6f2cfd489b 100644 --- a/docs/reference/JCO_Four.html +++ b/docs/reference/JCO_Four.html @@ -17,7 +17,7 @@ scCustomize - 2.1.1 + 2.1.2 diff --git a/docs/reference/LIGER_Features.html b/docs/reference/LIGER_Features.html index 097e07f5bb..84faad1926 100644 --- a/docs/reference/LIGER_Features.html +++ b/docs/reference/LIGER_Features.html @@ -17,7 +17,7 @@ scCustomize - 2.1.1 + 2.1.2 diff --git a/docs/reference/Liger_to_Seurat.html b/docs/reference/Liger_to_Seurat.html index f76508c3a1..d53b770758 100644 --- a/docs/reference/Liger_to_Seurat.html +++ b/docs/reference/Liger_to_Seurat.html @@ -18,7 +18,7 @@ scCustomize - 2.1.1 + 2.1.2 diff --git a/docs/reference/MAD_Stats.html b/docs/reference/MAD_Stats.html index cbf41597f6..2ead22d2f9 100644 --- a/docs/reference/MAD_Stats.html +++ b/docs/reference/MAD_Stats.html @@ -17,7 +17,7 @@ scCustomize - 2.1.1 + 2.1.2 diff --git a/docs/reference/Median_Stats.html b/docs/reference/Median_Stats.html index e8e278b209..6e2ac12830 100644 --- a/docs/reference/Median_Stats.html +++ b/docs/reference/Median_Stats.html @@ -17,7 +17,7 @@ scCustomize - 2.1.1 + 2.1.2 diff --git a/docs/reference/Merge_Seurat_List.html b/docs/reference/Merge_Seurat_List.html index 753c87f5e4..2b26f010a3 100644 --- a/docs/reference/Merge_Seurat_List.html +++ b/docs/reference/Merge_Seurat_List.html @@ -17,7 +17,7 @@ scCustomize - 2.1.1 + 2.1.2 diff --git a/docs/reference/Merge_Sparse_Data_All.html b/docs/reference/Merge_Sparse_Data_All.html index 6d8f6396ba..fd0e6adbf4 100644 --- a/docs/reference/Merge_Sparse_Data_All.html +++ b/docs/reference/Merge_Sparse_Data_All.html @@ -17,7 +17,7 @@ scCustomize - 2.1.1 + 2.1.2 diff --git a/docs/reference/Merge_Sparse_Multimodal_All.html b/docs/reference/Merge_Sparse_Multimodal_All.html index 4de9ae113c..122700d469 100644 --- a/docs/reference/Merge_Sparse_Multimodal_All.html +++ b/docs/reference/Merge_Sparse_Multimodal_All.html @@ -17,7 +17,7 @@ scCustomize - 2.1.1 + 2.1.2 diff --git a/docs/reference/Meta_Highlight_Plot.html b/docs/reference/Meta_Highlight_Plot.html index 6e373048be..2e405e3c72 100644 --- a/docs/reference/Meta_Highlight_Plot.html +++ b/docs/reference/Meta_Highlight_Plot.html @@ -17,7 +17,7 @@ scCustomize - 2.1.1 + 2.1.2 diff --git a/docs/reference/Meta_Numeric.html b/docs/reference/Meta_Numeric.html index 5dab29e78f..419b65973d 100644 --- a/docs/reference/Meta_Numeric.html +++ b/docs/reference/Meta_Numeric.html @@ -18,7 +18,7 @@ scCustomize - 2.1.1 + 2.1.2 diff --git a/docs/reference/Meta_Present.html b/docs/reference/Meta_Present.html index eeeeff5670..45c7680272 100644 --- a/docs/reference/Meta_Present.html +++ b/docs/reference/Meta_Present.html @@ -18,7 +18,7 @@ scCustomize - 2.1.1 + 2.1.2 diff --git a/docs/reference/Meta_Remove_Seurat.html b/docs/reference/Meta_Remove_Seurat.html index f775110b32..b4840682bb 100644 --- a/docs/reference/Meta_Remove_Seurat.html +++ b/docs/reference/Meta_Remove_Seurat.html @@ -17,7 +17,7 @@ scCustomize - 2.1.1 + 2.1.2 diff --git a/docs/reference/Move_Legend.html b/docs/reference/Move_Legend.html index 30f3793358..e821b6fe7e 100644 --- a/docs/reference/Move_Legend.html +++ b/docs/reference/Move_Legend.html @@ -17,7 +17,7 @@ scCustomize - 2.1.1 + 2.1.2 diff --git a/docs/reference/NavyAndOrange.html b/docs/reference/NavyAndOrange.html index 63b54933b0..80441407d2 100644 --- a/docs/reference/NavyAndOrange.html +++ b/docs/reference/NavyAndOrange.html @@ -17,7 +17,7 @@ scCustomize - 2.1.1 + 2.1.2 diff --git a/docs/reference/PC_Plotting.html b/docs/reference/PC_Plotting.html index e0a5a3ec81..453f17c7be 100644 --- a/docs/reference/PC_Plotting.html +++ b/docs/reference/PC_Plotting.html @@ -18,7 +18,7 @@ scCustomize - 2.1.1 + 2.1.2 diff --git a/docs/reference/PalettePlot.html b/docs/reference/PalettePlot.html index d838489a9d..0d39292da0 100644 --- a/docs/reference/PalettePlot.html +++ b/docs/reference/PalettePlot.html @@ -17,7 +17,7 @@ scCustomize - 2.1.1 + 2.1.2 diff --git a/docs/reference/Percent_Expressing.html b/docs/reference/Percent_Expressing.html index ca591c1fae..1dc4b5a1ee 100644 --- a/docs/reference/Percent_Expressing.html +++ b/docs/reference/Percent_Expressing.html @@ -17,7 +17,7 @@ scCustomize - 2.1.1 + 2.1.2 diff --git a/docs/reference/Plot_Cells_per_Sample.html b/docs/reference/Plot_Cells_per_Sample.html index 97eee1d69d..e0c3b5bed7 100644 --- a/docs/reference/Plot_Cells_per_Sample.html +++ b/docs/reference/Plot_Cells_per_Sample.html @@ -17,7 +17,7 @@ scCustomize - 2.1.1 + 2.1.2 diff --git a/docs/reference/Plot_Density_Custom.html b/docs/reference/Plot_Density_Custom.html index 03f98541df..7e3f24cbdc 100644 --- a/docs/reference/Plot_Density_Custom.html +++ b/docs/reference/Plot_Density_Custom.html @@ -17,7 +17,7 @@ scCustomize - 2.1.1 + 2.1.2 @@ -183,11 +183,10 @@

Value

Examples

-
# \donttest{
+    
if (FALSE) {
 library(Seurat)
 Plot_Density_Custom(seurat_object = pbmc_small, features = "CD3E")
-
-# }
+}
 
 
diff --git a/docs/reference/Plot_Density_Joint_Only.html b/docs/reference/Plot_Density_Joint_Only.html index bceb101edc..3a3615b59e 100644 --- a/docs/reference/Plot_Density_Joint_Only.html +++ b/docs/reference/Plot_Density_Joint_Only.html @@ -17,7 +17,7 @@ scCustomize - 2.1.1 + 2.1.2
@@ -173,11 +173,10 @@

Value

Examples

-
# \donttest{
+    
if (FALSE) {
 library(Seurat)
 Plot_Density_Joint_Only(seurat_object = pbmc_small, features = c("CD8A", "CD3E"))
-
-# }
+}
 
 
diff --git a/docs/reference/Plot_Median_Genes.html b/docs/reference/Plot_Median_Genes.html index d75e58f261..1646af34de 100644 --- a/docs/reference/Plot_Median_Genes.html +++ b/docs/reference/Plot_Median_Genes.html @@ -17,7 +17,7 @@ scCustomize - 2.1.1 + 2.1.2
diff --git a/docs/reference/Plot_Median_Mito.html b/docs/reference/Plot_Median_Mito.html index 956517df98..bf9a72f095 100644 --- a/docs/reference/Plot_Median_Mito.html +++ b/docs/reference/Plot_Median_Mito.html @@ -17,7 +17,7 @@ scCustomize - 2.1.1 + 2.1.2 diff --git a/docs/reference/Plot_Median_Other.html b/docs/reference/Plot_Median_Other.html index 71e12887dd..7e15ed516c 100644 --- a/docs/reference/Plot_Median_Other.html +++ b/docs/reference/Plot_Median_Other.html @@ -17,7 +17,7 @@ scCustomize - 2.1.1 + 2.1.2 diff --git a/docs/reference/Plot_Median_UMIs.html b/docs/reference/Plot_Median_UMIs.html index d5b7438865..75d1752cd6 100644 --- a/docs/reference/Plot_Median_UMIs.html +++ b/docs/reference/Plot_Median_UMIs.html @@ -17,7 +17,7 @@ scCustomize - 2.1.1 + 2.1.2 diff --git a/docs/reference/Pull_Cluster_Annotation.html b/docs/reference/Pull_Cluster_Annotation.html index 19081f25dd..66edb243b2 100644 --- a/docs/reference/Pull_Cluster_Annotation.html +++ b/docs/reference/Pull_Cluster_Annotation.html @@ -18,7 +18,7 @@ scCustomize - 2.1.1 + 2.1.2 diff --git a/docs/reference/Pull_Directory_List.html b/docs/reference/Pull_Directory_List.html index c958a52b9c..77a1fb6986 100644 --- a/docs/reference/Pull_Directory_List.html +++ b/docs/reference/Pull_Directory_List.html @@ -17,7 +17,7 @@ scCustomize - 2.1.1 + 2.1.2 diff --git a/docs/reference/QC_Histogram.html b/docs/reference/QC_Histogram.html index 13600579cf..d8e228d029 100644 --- a/docs/reference/QC_Histogram.html +++ b/docs/reference/QC_Histogram.html @@ -17,7 +17,7 @@ scCustomize - 2.1.1 + 2.1.2 diff --git a/docs/reference/QC_Plot_GenevsFeature.html b/docs/reference/QC_Plot_GenevsFeature.html index bda91cc2e5..357b494f54 100644 --- a/docs/reference/QC_Plot_GenevsFeature.html +++ b/docs/reference/QC_Plot_GenevsFeature.html @@ -17,7 +17,7 @@ scCustomize - 2.1.1 + 2.1.2 diff --git a/docs/reference/QC_Plot_UMIvsFeature.html b/docs/reference/QC_Plot_UMIvsFeature.html index 1a8efa2c7d..9d3de6311d 100644 --- a/docs/reference/QC_Plot_UMIvsFeature.html +++ b/docs/reference/QC_Plot_UMIvsFeature.html @@ -17,7 +17,7 @@ scCustomize - 2.1.1 + 2.1.2 diff --git a/docs/reference/QC_Plot_UMIvsGene.html b/docs/reference/QC_Plot_UMIvsGene.html index 4bec86d384..48cd9eb400 100644 --- a/docs/reference/QC_Plot_UMIvsGene.html +++ b/docs/reference/QC_Plot_UMIvsGene.html @@ -17,7 +17,7 @@ scCustomize - 2.1.1 + 2.1.2 diff --git a/docs/reference/QC_Plots_Combined_Vln.html b/docs/reference/QC_Plots_Combined_Vln.html index d0a50d4665..2348f14f35 100644 --- a/docs/reference/QC_Plots_Combined_Vln.html +++ b/docs/reference/QC_Plots_Combined_Vln.html @@ -17,7 +17,7 @@ scCustomize - 2.1.1 + 2.1.2 diff --git a/docs/reference/QC_Plots_Complexity.html b/docs/reference/QC_Plots_Complexity.html index a8e351ed68..451a2d60db 100644 --- a/docs/reference/QC_Plots_Complexity.html +++ b/docs/reference/QC_Plots_Complexity.html @@ -17,7 +17,7 @@ scCustomize - 2.1.1 + 2.1.2 diff --git a/docs/reference/QC_Plots_Feature.html b/docs/reference/QC_Plots_Feature.html index 4faa9a7336..e42797aea5 100644 --- a/docs/reference/QC_Plots_Feature.html +++ b/docs/reference/QC_Plots_Feature.html @@ -17,7 +17,7 @@ scCustomize - 2.1.1 + 2.1.2 diff --git a/docs/reference/QC_Plots_Genes.html b/docs/reference/QC_Plots_Genes.html index 4c27cec01b..949455e632 100644 --- a/docs/reference/QC_Plots_Genes.html +++ b/docs/reference/QC_Plots_Genes.html @@ -17,7 +17,7 @@ scCustomize - 2.1.1 + 2.1.2 diff --git a/docs/reference/QC_Plots_Mito.html b/docs/reference/QC_Plots_Mito.html index 7ea1f3f2aa..34c4288083 100644 --- a/docs/reference/QC_Plots_Mito.html +++ b/docs/reference/QC_Plots_Mito.html @@ -17,7 +17,7 @@ scCustomize - 2.1.1 + 2.1.2 diff --git a/docs/reference/QC_Plots_UMIs.html b/docs/reference/QC_Plots_UMIs.html index b1ecd9eb62..47c47fc2b4 100644 --- a/docs/reference/QC_Plots_UMIs.html +++ b/docs/reference/QC_Plots_UMIs.html @@ -17,7 +17,7 @@ scCustomize - 2.1.1 + 2.1.2 diff --git a/docs/reference/Read10X_GEO.html b/docs/reference/Read10X_GEO.html index c077bf2c7e..15071889b2 100644 --- a/docs/reference/Read10X_GEO.html +++ b/docs/reference/Read10X_GEO.html @@ -18,7 +18,7 @@ scCustomize - 2.1.1 + 2.1.2 diff --git a/docs/reference/Read10X_Multi_Directory.html b/docs/reference/Read10X_Multi_Directory.html index 493605c4db..4db57a125b 100644 --- a/docs/reference/Read10X_Multi_Directory.html +++ b/docs/reference/Read10X_Multi_Directory.html @@ -19,7 +19,7 @@ scCustomize - 2.1.1 + 2.1.2 diff --git a/docs/reference/Read10X_h5_GEO.html b/docs/reference/Read10X_h5_GEO.html index d748244a2c..4d027ffee7 100644 --- a/docs/reference/Read10X_h5_GEO.html +++ b/docs/reference/Read10X_h5_GEO.html @@ -18,7 +18,7 @@ scCustomize - 2.1.1 + 2.1.2 diff --git a/docs/reference/Read10X_h5_Multi_Directory.html b/docs/reference/Read10X_h5_Multi_Directory.html index ac11c0d416..8ef690c392 100644 --- a/docs/reference/Read10X_h5_Multi_Directory.html +++ b/docs/reference/Read10X_h5_Multi_Directory.html @@ -19,7 +19,7 @@ scCustomize - 2.1.1 + 2.1.2 diff --git a/docs/reference/Read_CellBender_h5_Mat.html b/docs/reference/Read_CellBender_h5_Mat.html index 7270b2821b..8fe0710fa2 100644 --- a/docs/reference/Read_CellBender_h5_Mat.html +++ b/docs/reference/Read_CellBender_h5_Mat.html @@ -17,7 +17,7 @@ scCustomize - 2.1.1 + 2.1.2 diff --git a/docs/reference/Read_CellBender_h5_Multi_Directory.html b/docs/reference/Read_CellBender_h5_Multi_Directory.html index 4721b2f742..da319f2460 100644 --- a/docs/reference/Read_CellBender_h5_Multi_Directory.html +++ b/docs/reference/Read_CellBender_h5_Multi_Directory.html @@ -18,7 +18,7 @@ scCustomize - 2.1.1 + 2.1.2 diff --git a/docs/reference/Read_CellBender_h5_Multi_File.html b/docs/reference/Read_CellBender_h5_Multi_File.html index b649eb5576..221de9a083 100644 --- a/docs/reference/Read_CellBender_h5_Multi_File.html +++ b/docs/reference/Read_CellBender_h5_Multi_File.html @@ -18,7 +18,7 @@ scCustomize - 2.1.1 + 2.1.2 diff --git a/docs/reference/Read_GEO_Delim.html b/docs/reference/Read_GEO_Delim.html index 7d84b79b57..189aee1c99 100644 --- a/docs/reference/Read_GEO_Delim.html +++ b/docs/reference/Read_GEO_Delim.html @@ -17,7 +17,7 @@ scCustomize - 2.1.1 + 2.1.2 diff --git a/docs/reference/Read_Metrics_10X.html b/docs/reference/Read_Metrics_10X.html index 91e46147b0..a0f6791646 100644 --- a/docs/reference/Read_Metrics_10X.html +++ b/docs/reference/Read_Metrics_10X.html @@ -17,7 +17,7 @@ scCustomize - 2.1.1 + 2.1.2 diff --git a/docs/reference/Reduction_Loading_Present.html b/docs/reference/Reduction_Loading_Present.html index b1bbe15727..95672cc9b5 100644 --- a/docs/reference/Reduction_Loading_Present.html +++ b/docs/reference/Reduction_Loading_Present.html @@ -18,7 +18,7 @@ scCustomize - 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2.1.1 + 2.1.2 diff --git a/docs/reference/Seq_QC_Plot_UMIs.html b/docs/reference/Seq_QC_Plot_UMIs.html index 52c6a15c80..23e78b94c7 100644 --- a/docs/reference/Seq_QC_Plot_UMIs.html +++ b/docs/reference/Seq_QC_Plot_UMIs.html @@ -17,7 +17,7 @@ scCustomize - 2.1.1 + 2.1.2 diff --git a/docs/reference/Setup_scRNAseq_Project.html b/docs/reference/Setup_scRNAseq_Project.html index a22a165663..f1d845ba1e 100644 --- a/docs/reference/Setup_scRNAseq_Project.html +++ b/docs/reference/Setup_scRNAseq_Project.html @@ -17,7 +17,7 @@ scCustomize - 2.1.1 + 2.1.2 diff --git a/docs/reference/Single_Color_Palette.html b/docs/reference/Single_Color_Palette.html index aa18e36262..374d9f8b94 100644 --- a/docs/reference/Single_Color_Palette.html +++ b/docs/reference/Single_Color_Palette.html @@ -17,7 +17,7 @@ scCustomize - 2.1.1 + 2.1.2 diff --git a/docs/reference/Split_Layers.html b/docs/reference/Split_Layers.html index 24ee7b6589..5cc2c10557 100644 --- a/docs/reference/Split_Layers.html +++ b/docs/reference/Split_Layers.html @@ -17,7 +17,7 @@ scCustomize - 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2.1.1 + 2.1.2 diff --git a/docs/reference/Top_Genes_Factor.html b/docs/reference/Top_Genes_Factor.html index 26ae6b15e9..40162535c0 100644 --- a/docs/reference/Top_Genes_Factor.html +++ b/docs/reference/Top_Genes_Factor.html @@ -17,7 +17,7 @@ scCustomize - 2.1.1 + 2.1.2 diff --git a/docs/reference/UnRotate_X.html b/docs/reference/UnRotate_X.html index 971c3e14fc..a2ab19e9f3 100644 --- a/docs/reference/UnRotate_X.html +++ b/docs/reference/UnRotate_X.html @@ -17,7 +17,7 @@ scCustomize - 2.1.1 + 2.1.2 diff --git a/docs/reference/Updated_HGNC_Symbols.html b/docs/reference/Updated_HGNC_Symbols.html index c185889d4e..14b0c61a37 100644 --- a/docs/reference/Updated_HGNC_Symbols.html +++ b/docs/reference/Updated_HGNC_Symbols.html @@ -17,7 +17,7 @@ scCustomize - 2.1.1 + 2.1.2 diff --git a/docs/reference/VariableFeaturePlot_scCustom.html b/docs/reference/VariableFeaturePlot_scCustom.html index d10cd783e3..4ea01dde55 100644 --- a/docs/reference/VariableFeaturePlot_scCustom.html +++ b/docs/reference/VariableFeaturePlot_scCustom.html @@ -17,7 +17,7 @@ scCustomize - 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2.1.1 + 2.1.2 diff --git a/docs/reference/as.anndata.html b/docs/reference/as.anndata.html index 55a2c194ac..0ce3601ad6 100644 --- a/docs/reference/as.anndata.html +++ b/docs/reference/as.anndata.html @@ -17,7 +17,7 @@ scCustomize - 2.1.1 + 2.1.2 diff --git a/docs/reference/deprecated.html b/docs/reference/deprecated.html index 72ef1133c9..28f4ac1791 100644 --- a/docs/reference/deprecated.html +++ b/docs/reference/deprecated.html @@ -22,7 +22,7 @@ scCustomize - 2.1.1 + 2.1.2 diff --git a/docs/reference/ensembl_mito_id.html b/docs/reference/ensembl_mito_id.html index 60ec21890f..a74e167115 100644 --- a/docs/reference/ensembl_mito_id.html +++ b/docs/reference/ensembl_mito_id.html @@ -17,7 +17,7 @@ scCustomize - 2.1.1 + 2.1.2 diff --git a/docs/reference/ensembl_ribo_id.html b/docs/reference/ensembl_ribo_id.html index 76b4861502..d45e742081 100644 --- a/docs/reference/ensembl_ribo_id.html +++ b/docs/reference/ensembl_ribo_id.html @@ -17,7 +17,7 @@ scCustomize - 2.1.1 + 2.1.2 diff --git a/docs/reference/ieg_gene_list.html b/docs/reference/ieg_gene_list.html index d206dc8834..fd972ecb55 100644 --- a/docs/reference/ieg_gene_list.html +++ b/docs/reference/ieg_gene_list.html @@ -17,7 +17,7 @@ scCustomize - 2.1.1 + 2.1.2 diff --git a/docs/reference/index.html b/docs/reference/index.html index f63cd0b3d4..6a357d1c70 100644 --- a/docs/reference/index.html +++ b/docs/reference/index.html @@ -17,7 +17,7 @@ scCustomize - 2.1.1 + 2.1.2 diff --git a/docs/reference/msigdb_qc_gene_list.html b/docs/reference/msigdb_qc_gene_list.html index 6864d37b11..293799e861 100644 --- a/docs/reference/msigdb_qc_gene_list.html +++ b/docs/reference/msigdb_qc_gene_list.html @@ -18,7 +18,7 @@ scCustomize - 2.1.1 + 2.1.2 diff --git a/docs/reference/plotFactors_scCustom.html b/docs/reference/plotFactors_scCustom.html index b9cd21ff44..8cdb78bddf 100644 --- a/docs/reference/plotFactors_scCustom.html +++ b/docs/reference/plotFactors_scCustom.html @@ -17,7 +17,7 @@ scCustomize - 2.1.1 + 2.1.2 diff --git a/docs/reference/reexports.html b/docs/reference/reexports.html index 4e87ae7e9f..cfa559ff46 100644 --- a/docs/reference/reexports.html +++ b/docs/reference/reexports.html @@ -24,7 +24,7 @@ scCustomize - 2.1.1 + 2.1.2 diff --git a/docs/reference/scCustomize-package.html b/docs/reference/scCustomize-package.html index 0b45230a71..1851baf7ec 100644 --- a/docs/reference/scCustomize-package.html +++ b/docs/reference/scCustomize-package.html @@ -18,7 +18,7 @@ scCustomize - 2.1.1 + 2.1.2 diff --git a/docs/reference/scCustomize_Palette.html b/docs/reference/scCustomize_Palette.html index 532dfaaf07..582f41c391 100644 --- a/docs/reference/scCustomize_Palette.html +++ b/docs/reference/scCustomize_Palette.html @@ -17,7 +17,7 @@ scCustomize - 2.1.1 + 2.1.2 diff --git a/docs/reference/theme_ggprism_mod.html b/docs/reference/theme_ggprism_mod.html index 4d1699eeed..a15e8b2193 100644 --- a/docs/reference/theme_ggprism_mod.html +++ b/docs/reference/theme_ggprism_mod.html @@ -17,7 +17,7 @@ scCustomize - 2.1.1 + 2.1.2 diff --git a/docs/reference/viridis_shortcut.html b/docs/reference/viridis_shortcut.html index caf557c9bd..8770837bc2 100644 --- a/docs/reference/viridis_shortcut.html +++ b/docs/reference/viridis_shortcut.html @@ -17,7 +17,7 @@ scCustomize - 2.1.1 + 2.1.2 diff --git a/inst/pkgdown.yml b/inst/pkgdown.yml index fc4cea9e40..084ef83a15 100644 --- a/inst/pkgdown.yml +++ b/inst/pkgdown.yml @@ -18,7 +18,7 @@ articles: Sequencing_QC_Plots: Sequencing_QC_Plots.html Statistics: Statistics.html Update_Gene_Symbols: Update_Gene_Symbols.html -last_built: 2024-02-24T00:19Z +last_built: 2024-02-28T19:49Z urls: reference: https://samuel-marsh.github.io/scCustomize/reference article: https://samuel-marsh.github.io/scCustomize/articles