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<html>
<head>
<title>Sanchit Misra</title>
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<table width="60%" border="0" align="center">
<tr><td>
<table border="0" width="0%" cellpadding="0" cellspacing="10"
align="right">
<tr><td class="style_line"><a href="#bio">Bio</a></td></tr>
<tr><td class="style_line"><a href="#past">Education and Experience</a></td></tr>
<tr><td class="style_line"><a href="#research">Research Interests</a></td></tr>
<tr><td class="style_line"><a href="#publications">Publications</a></td></tr>
<tr><td class="style_line"><a href="smisra.pdf">Curriculum Vitae</a></td></tr>
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<td align="left" valign="center" class="style_bl">Sanchit Misra </td>
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<tr><td class="style_m">
Parallel Computing Lab, Intel, Bangalore, India</td></tr>
<tr><td> </td></tr>
<tr><td class="style_m">
<a href="https://www.linkedin.com/in/sanchit-misra-5b95634">LinkedIn</a> <a href="https://twitter.com/sanchit_misra">Twitter</a> <a href="https://scholar.google.co.in/citations?hl=en&user=JKZYl2YAAAAJ">Google Scholar</a> <a href="https://www.researchgate.net/profile/Sanchit_Misra2">ResearchGate</a> <a href="https://github.com/sanchit-misra">GitHub</a>
</td></tr>
<tr><td><table>
<tr><td class="style_m">Phone: </td><td class="style_m">+91-80-62115179</td></tr>
<tr><td class="style_m" valign="left">Email:</td> <td class="style_m">sanchit.misra AT intel DOT com </td></tr>
</table></td></tr>
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<td><img align=right height=200 src="smisra_ellora.jpg"></td>
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<table width="60%" border="0" align="center" cellpadding="4" cellspacing="7">
<tr><td class="style_line"><span class="style_bm"> <a name="bio">Bio</a></span></td>
</td></tr>
<tr><td class="style_word" align="justify">
Sanchit Misra is currently a research scientist at Intel’s Parallel Computing Lab, Bengaluru, India.
His research interests include high-performance computational biology, machine learning,
parallel algorithms, and application driven architecture research.
He received a PhD degree in computer engineering from the Department of <A HREF="http://www.eecs.northwestern.edu">Electrical Engineering and
Computer Science</A> at <a href="http://www.northwestern.edu">Northwestern University </a> in 2011.
<br/><br/>
<tr><td class="style_line"><span class="style_bm"> <a name="past">Education and Experience</a></span></td>
<tr><td class="style_word">
<ul type=disc>
<li>
Research Scientist, Intel, Parallel Computing Lab, Bangalore, India (December, 2011 - Present)
</li><br>
<li>
PhD, Electical Engineering and Computer Science,
<a href="http://www.northwestern.edu">Northwestern University</a>,
Evanston, IL, USA (September, 2006 - October, 2011)
</li><br>
<li>
Summer Intern, Google,
Mountain View, CA, USA (June, 2010 - September, 2010)
</li><br>
<li>
Summer Intern, <a href="http://www.intel.com">Intel</a>,
Hillsboro, OR, USA (June, 2007 - September, 2007)
</li><br>
<li>
Software Engineer, <a href="http://www.trilogy.com">Trilogy</a>,
Bangalore, India (July, 2005 - July, 2006)
</li><br>
<li>
Bachelor of Technology, Computer Science and Engineering,
<a href="http://www.iitkgp.ernet.in">Indian Institute of Technology, Kharagpur</a>, India (July, 2001 - May, 2005)
</li><br>
<li>
Summer Intern,
<a href="http://www.ens-lyon.fr/LIP/COMPSYS/">Compsys team, INRIA</a>,
ENS, Lyon, France (May, 2004 - July, 2004)
</li><br>
</ul>
</td></tr>
</td></tr>
<tr><td class="style_line"><span class="style_bm"> <a name="research">Research Interests </a></span></td>
<tr><td class="style_word" align="justify">
<ul type=disc>
<li>
High Performance Computational Biology
</li><br>
<li>
Application of Machine Learning to computational biology, in particular, various Omics.
</li><br>
<li>
Application Driven Architecture Research
</li><br>
<li>
Parallel Algorithms
</li><br>
<li>
High Performance Computing
</li><br>
</ul>
</td></tr>
</td></tr>
<tr><td class="style_line"><span class="style_bm"> <a name="publications">Publications</a></span></td>
<tr><td class="style_word">
<ul type=disc>
<li>Vasimuddin Md, <b>Sanchit Misra</b>, Heng Li, Srinivas Aluru.
<b> Efficient Architecture-Aware Acceleration of BWA-MEM for Multicore Systems.</b>
<i>IEEE International Parallel and Distributed Processing Symposium (IPDPS), 2019</i>.
</li><br>
<li>Chirag Jain, <b>Sanchit Misra</b>, Haowen Zhang, Alexander Dilthey, Srinivas Aluru.
<b> Accelerating Sequence Alignment to Graphs.</b>
<i>IEEE International Parallel and Distributed Processing Symposium (IPDPS), 2019</i>.
</li><br>
<li>Tony Pan, <b>Sanchit Misra</b>, Srinivas Aluru.
<b> Optimizing High Performance Distributed Memory Parallel Hash Tables for DNA k-mer Counting.</b>
<i>Supercomputing, 2018</i>.
</li><br>
<li><b>Sanchit Misra</b>, Tony Pan, Kanak Mahadik, George Powley, Priya N. Vaidya, Md Vasimuddin, Srinivas Aluru.
<b> Performance Extraction and Suitability Analysis of Multi- and Many-core Architectures for Next Generation Sequencing Secondary Analysis.</b>
<i>Parallel Architectures and Compilation Techniques (PACT, 2018)</i>.
</li><br>
<li>Md Vasimuddin, <b>Sanchit Misra</b>, Srinivas Aluru.
<b> Identification of Significant Computational Building Blocks through Comprehensive Deep Dive of NGS Secondary Analysis Methods.</b>
<i>BioRxiv 301903</i>.
</li><br>
<li>Jing Zhang, <b>Sanchit Misra</b>, Hao Wang, Wuchun Feng.
<b> Eliminating irregularities of protein sequence search on multicore architectures.</b>
<i>IEEE International Parallel and Distributed Processing Symposium (IPDPS), 2017</i>.
</li><br>
<li>Jing Zhang, <b>Sanchit Misra</b>, Hao Wang, Wuchun Feng.
<b> muBLASTP: database-indexed protein sequence search on multicore CPUs.</b>
<i>BMC Bioinformatics. 2016; 17: 443</i>.
</li><br>
<li>Edmond Chow, Xing Liu, Sanchit Misra, Marat Dukhan, Mikhail Smelyanskiy, Jeff R. Hammond, Yunfei Du, Xiang-Ke Liao and Pradeep Dubey.
<b> Scaling up Hartree–Fock calculations on Tianhe-2.</b>
<i>The International Journal of High Performance Computing Applications, Volume 30 Issue 1, 2 2016, Pages 85-102</i>.
</li><br>
<li><b>Sanchit Misra</b>, Kiran Pamnany, Srinivas Aluru.
<b> Parallel Mutual Information Based Construction of Genome-Scale Networks on the Intel® Xeon Phi™ Coprocessor.</b>
<i>IEEE/ACM transactions on computational biology and bioinformatics, Volume 12, Issue 5, Sept-Oct. 1 2015</i>.
</li><br>
<li>Kiran Pamnany, <b>Sanchit Misra</b>, Md Vasimuddin, Xing Liu, Edmond Chow, Srinivas Aluru.
<b> Dtree: Dynamic task scheduling at petascale.</b>
<i>ISC high Performance, 2015</i>.
</li><br>
<li><b>Sanchit Misra</b>, Md Vasimuddin, Kiran Pamnany, Sriram P. Chockalingam, Yong Dong, Min Xie, Maneesha R. Aluru, Srinivas Aluru.
<b> Parallel Bayesian Network Structure Learning for Genome-scale Gene Networks.</b>
<i>Supercomputing, 2014</i>. <b>Best paper finalist</b>.
</li><br>
<li><b>Sanchit Misra</b>, Kiran Pamnany, Srinivas Aluru.
<b> Parallel Mutual Information Based Construction of Whole-genome Networks on the Intel® Xeon Phi™ Coprocessor.</b>
<i>IEEE International Parallel and Distributed Processing Symposium (IPDPS), 2014</i>.
</li><br>
<li>Yuhong Zhang, <b>Sanchit Misra</b>, Ankit Agrawal, Md Mostofa Ali Patwary, Wei-keng Liao, Zhiguang Qin, Alok Choudhary.
<b> Accelerating pairwise statistical significance estimation for local alignment by harvesting GPU's power.</b>
<i>BMC Bioinformatics. 2012; 13(Suppl 5): S3</i>.
</li><br>
<li>Yuhong Zhang, Md Mostofa Ali Patwary, <b>Sanchit Misra</b>, Ankit Agrawal, Wei-keng Liao, Zhiguang Qin, Alok Choudhary.
<b> Par-psse: Software for pairwise statistical significance estimation in parallel for local sequence alignment.</b>
<i>International Journal of Digital Content Technology and its Applications, Volume 6, Issue 5, March 2012, Pages 200-208</i>.
</li><br>
<li>Ankit Agrawal, <b>Sanchit Misra</b>, Ramanathan Narayanan, Lalith Polepeddi, Alok Choudhary.
<b> Lung cancer survival prediction using ensemble data mining on SEER data.</b>
<i>Scientific Programming, Volume 20, Issue 1, 2012, Pages 29-42</i>.
</li><br>
<li>Ankit Agrawal, <b>Sanchit Misra</b>, Daniel Honbo, Alok Choudhary.
<b> Parallel pairwise statistical significance estimation of local sequence alignment using message passing interface library.</b>
<i>Concurrency and Computation: Practice and Experience, Volume 23, Issue 17, 2011, Pages 2269-2279</i>.
</li><br>
<li>Yuhong Zhang, Md Mostofa Ali Patwary, <b>Sanchit Misra</b>, Ankit Agrawal, Wei-keng Liao, Alok N Choudhary.
<b> Enhancing parallelism of pairwise statistical significance estimation for local sequence alignment.</b>
<i>Proceedings of HiPC Workshops, Workshop on Hybrid Multi-core Computing, pp. 1-8, Dec. 2011</i>.
</li><br>
<li>Ankit Agrawal, <b>Sanchit Misra</b>, Ramanathan Narayanan, Lalith Polepeddi, Alok N Choudhary.
<b> A lung cancer outcome calculator using ensemble data mining on SEER data.</b>
<i>Proceedings of the Tenth International Workshop on Data Mining in Bioinformatics, BIOKDD'11</i>.
</li><br>
<li>Ankit Agrawal, <b>Sanchit Misra</b>, Alok N Choudhary, Karl Bilimoria.
<b> Poster: Risk prediction for post-operative adverse outcomes in colorectal cancer surgery.</b>
<i>IEEE 1st International Conference on Computational Advances in Bio and Medical Sciences (ICCABS), 2011</i>.
</li><br>
<li>Ankit Agrawal, <b>Sanchit Misra</b>, Ramanathan Narayanan, Lalith Polepeddi, Alok Choudhary.
<b> Poster: A lung cancer mortality risk calculator based on SEER data.</b>
<i>IEEE 1st International Conference on Computational Advances in Bio and Medical Sciences (ICCABS), 2011</i>.
</li><br>
<li>Yuhong Zhang, <b>Sanchit Misra</b>, Daniel Honbo, Ankit Agrawal, Wei-keng Liao, Alok Choudhary.
<b> Efficient pairwise statistical significance estimation for local sequence alignment using GPU.</b>
<i>IEEE 1st International Conference on Computational Advances in Bio and Medical Sciences (ICCABS), 2011</i>.
</li><br>
<li>Alok N Choudhary, Daniel Honbo, Prabhat Kumar, Berkin Ozisikyilmaz, <b>Sanchit Misra</b>, Gokhan Memik.
<b> Accelerating data mining workloads: current approaches and future challenges in system architecture design.</b>
<i>Wiley Interdisciplinary Reviews: Data Mining and Knowledge Discovery, Volume 1, Issue 1, Pages 41-54, 2011</i>.
</li><br>
<li><b>Sanchit Misra</b>, Ankit Agrawal, Wei-keng Liao, Alok Choudhary.
<b> Anatomy of a hash-based long read sequence mapping algorithm for next generation DNA sequencing.</b>
<i>Bioinformatics, Volume 27, Issue 2, Pages 189-195, 2010</i>.
</li><br>
<li>Ankit Agrawal, <b>Sanchit Misra</b>, Daniel Honbo, and Alok Choudhary. <b>MPIPairwiseStatSig: Parallel
Pairwise Statistical Significance Estimation of Local Sequence Alignment.</b> In <i>ECMLS
proceedings of HPDC</i> 2010, pp. 470-476.
</li><br>
<li><b>Sanchit Misra</b>, Ramanathan Narayanan, Wei-keng Liao, Alok Choudhary and Simon Lin. <b>pFANGS:
Parallel High Speed Sequence Mapping for Next Generation 454-Roche
Sequencing Reads.</b> In Proc. <i>Ninth IEEE International Workshop on High
Performance Computational Biology (IPDPS 2010)</i>, April, 2010, Atlanta, GA.
</li><br>
<li><b>Sanchit Misra</b>, Ramanathan Narayanan, Simon Lin and Alok
Choudhary. <b>FANGS: High Speed Sequence Mapping for Next
Generation Sequencing Reads.</b> In Proceedings of <i>ACM Symposium
of Applied Computing (ACM SAC)</i>, March 22-26, 2010, Sierre, Switzerland.
</li><br>
<li>Ramanathan Narayanan, <b>Sanchit Misra</b>, Simon Lin and Alok Choudhary. <b>Mining Protein Interactions from Text using
Convolution Kernels.</b> In <i>AIBDM 09</i>, held in conjunction with
<i>Pacific Asia Conference on Knowledge Discovery and Data mining
(PAKDD 2009)</i>, April 27-30, 2009, Bangkok.
</li><br>
<li><b>Sanchit Misra</b>, Ramanathan Narayanan, Simon Lin and Alok Choudhary. <b>HiSSS: A
High Speed Sequence Search Method for Next Generation Sequences.</b> In <i>Intelligent
Systems for Molecular Biology (ISMB)[Poster] </i>, Toronto, Canada, July 2008.
</li><br>
<li>Ramanathan Narayanan, <b>Sanchit Misra</b>, Simon Lin and Alok Choudhary. <b>Mining Protein
Interactions from Text using Convolution Kernels.</b> In <i>Intelligent Systems for Molecular
Biology (ISMB)[Poster] </i>, Toronto, Canada, July 2008.
</li><br>
<li> <b>Sanchit Misra</b>, Ramanathan Narayanan, Daniel Honbo and Alok Choudhary. <b>(Book
Chapter) "High Performance Distributed Data Mining".</b> <i>Next Generation of Data Mining </i>,
2008, CRC Press.
</li><br>
<li>D. Bild, <b>S. Misra</b>, T. Chantem, P. Kumar, R. P. Dick, X. S. Hu, L. Shang, and A. Choudhary,
<b>Temperature-Aware Test Scheduling for Multiprocessor
Systems-On-Chip.</b> In <i>Proceedings International Conference on
Computer-Aided Design</i>, San Jose, CA, Nov. 2008.
</li> <br>
<li>A. Das, <b>S. Misra</b>, S. Joshi, J. Zambreno, G. Memik and A. Choudhary. <b>An Efficient FPGA Implementation of Principal Component Analysis based Network Intrusion
Detection System.</b> In <i>Proceedings of Design, Automation & Test in Europe (DATE)</i>, Munich,
Germany, March 2008.</li>
</ul>
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Last modified: 01/09/2008 4:06PM CST
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