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I am getting the following error when I run art in an environment. I am new to using environments and am not sure if it changes anything or not. I installed using bioconda.
Error: Could not find or load main class uk.ac.sanger.artemis.components.ArtemisMain
Caused by: java.lang.ClassNotFoundException: uk.ac.sanger.artemis.components.ArtemisMain
The text was updated successfully, but these errors were encountered:
I have the same issue on Arch Linux, using either openjdk 11 or 16.
It happens both from the Arch User Repository package or by cloning the code from Github directly.
Edit: ah, looks like it's not installed properly. mvn clean package fails with
[ERROR] Failed to execute goal on project artemis: Could not resolve dependencies for project uk.ac.sanger:artemis:jar:18.1.0: The following artifacts could not be resolved: com.ibatis:ibatis:jar:2.3.4.726, com.sshtools:j2ssh-core:jar:0.2.9, org.emboss:jemboss:jar:1.0, org.biojava:biojava:jar:1.6: Could not find artifact com.ibatis:ibatis:jar:2.3.4.726 in central (https://repo.maven.apache.org/maven2)
Cleaning and recompiling everything from scratch worked eventually. I was just confused by how to use Maven.
I am getting the following error when I run art in an environment. I am new to using environments and am not sure if it changes anything or not. I installed using bioconda.
Error: Could not find or load main class uk.ac.sanger.artemis.components.ArtemisMain
Caused by: java.lang.ClassNotFoundException: uk.ac.sanger.artemis.components.ArtemisMain
The text was updated successfully, but these errors were encountered: