Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

Fine mapping to reproduce COVID19 results #14

Open
priyamvadagr opened this issue May 31, 2023 · 2 comments
Open

Fine mapping to reproduce COVID19 results #14

priyamvadagr opened this issue May 31, 2023 · 2 comments
Labels
help wanted Extra attention is needed

Comments

@priyamvadagr
Copy link

priyamvadagr commented May 31, 2023 •
edited
Loading

Hi,
I am trying to reproduce the fine mapping results for your COVID19 analysis, but I am not able to get the same sentinel SNPs as reported. Would it be possible for you to share the reference panel and script used by you?
Thanks
@priyamvadagr priyamvadagr added the bug Something isn't working label May 31, 2023
@fl-yu
Copy link
Member

fl-yu commented Jun 5, 2023

Hi We appreciate your interest in our work. Would the following information be beneficial to you? https://github.com/sankaranlab/SCAVENGE-reproducibility/blob/main/data/finemappedtraits_hg19/covid19hg_B1_FMdata.txt

@fl-yu fl-yu added help wanted Extra attention is needed and removed bug Something isn't working labels Jun 5, 2023
@priyamvadagr
Copy link
Author

Hi! Thank you for getting back to me. We want to reproduce these finemapping results and were wondering if you could provide us with details regarding the reference panel used.

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Assignees
No one assigned
Labels
help wanted Extra attention is needed
Projects
None yet
Milestone
No milestone
Development

No branches or pull requests
2 participants
@fl-yu @priyamvadagr