mahvLaTeXCommands.tex

% ------------------------------------------------
% Abbreviations and other commands
% ------------------------------------------------
\newcommand{\lrRound}[1]{\left(#1\right)}
\newcommand{\lrSquare}[1]{\left[#1\right]}
\newcommand{\lrSet}[1]{\left\{#1\right\}}
\newcommand{\lrAbs}[1]{\left|#1\right|}
\newcommand{\lrNorm}[1]{\left\|#1\right\|}
\newcommand{\prob}[1]{\mathbf{P}\left\{ #1\right\}}
\newcommand{\eg}{\textit{e.g.}}
\newcommand{\ie}{\textit{i.e.}}
\newcommand{\potassium}{{K$^+$}}
\newcommand{\kalium}{{K$^+$}}
\newcommand{\hydrogen}{{H$^+$}}
\newcommand{\sodium}{{Na$^+$}}
\newcommand{\natrium}{{Na$^+$}}
\newcommand{\calcium}{{Ca$^{2+}$}}
\newcommand{\chloride}{{Cl$^{-}$}}
\newcommand{\magnessium}{{Mg$^{2+}$}}
\newcommand{\concRatio}[1]{ \frac{ [{#1}]_{0} }{ [{#1}]_{1}} } 
\newcommand{\extConc}[1]{[#1]_{0}}
\newcommand{\intConc}[1]{[#1]_{1}}
\newcommand{\concNa}{[Na]}
\newcommand{\concCa}{[Ca]}
\newcommand{\concCl}{[Cl]}
\newcommand{\concK}{[K]}
\newcommand{\felis}{{{$I_{cyc}$}}}
\newcommand{\icyc}{{{$I_{cyc}$}}}
\newcommand{\Avogadro}{N_{\mathrm{A}}}
\newcommand{\absTemp}{\mathrm{T}}
\newcommand{\GasConstant}{\mathrm{R}}
\newcommand{\Faraday}{\mathrm{F}}
\newcommand{\hPlanck}{\mathrm{h}}
\newcommand{\kBoltzmann}{\mathrm{k}}
\newcommand{\kT}{\mathrm{kT}}
\newcommand{\qElementary}{\mathrm{q}}
\newcommand{\hqovertwokT}[1]{\frac{\mathrm{e_0}#1}{2\mathrm{kT}}}
\newcommand{\hqoverkT}[1]{\frac{\bathroom{e_0}#1}{\mathrm{kT}}}
\def\qovertwokT{\mathrm{\frac{e_0}{2kT}}}
\def\qoverkT{\mathrm{\frac{e_0}{kT}}}
\newcommand{\trace}[1]{{\mathrm{Tr}(#1)}}
\newcommand{\tSm}{{\mathrm{Sm}}}
\newcommand{\tSy}{{\mathrm{Sy}}}
\newcommand{\tSt}{{\mathrm{St}}}
\newcommand{\tF}{{\mathrm{F}}}
\newcommand{\tLFP}{{\mathrm{LFP}}}
\newcommand{\tATP}{{\mathrm{ATP}}}
\newcommand{\tADP}{{\mathrm{ADP}}}
\newcommand{\tCaATP}{{\mathrm{CaATP}}}
\newcommand{\tP}{{\mathrm{P}}}
\newcommand{\tNa}{{\mathrm{Na}}}
\newcommand{\tNaK}{{\mathrm{NaK}}}
\newcommand{\tNaKa}{{\mathrm{NaKa}}}
\newcommand{\tNaP}{{\mathrm{NaP}}}
\newcommand{\tNaT}{{\mathrm{NaT}}}
\newcommand{\tNaH}{{\mathrm{NaH}}}
\newcommand{\tNaCa}{{\mathrm{NaCa}}}
\newcommand{\tNaKCl}{{\mathrm{NaKCl}}}
\newcommand{\tKCl}{{\mathrm{KCl}}}
\newcommand{\tCa}{{\mathrm{Ca}}}
\newcommand{\tCl}{{\mathrm{Cl}}}
\newcommand{\tCaL}{{\mathrm{CaL}}}
\newcommand{\tE}{{\mathrm{E}}}
\newcommand{\tExtra}{{\mathrm{Extra}}}
\newcommand{\tExt}{{\mathrm{Ext}}}
\newcommand{\tI}{{\mathrm{I}}}
\newcommand{\tGlu}{{\mathrm{GluA}}}
\newcommand{\tAMPA}{{\mathrm{AMPA}}}
\newcommand{\tGABA}{{\mathrm{GABA}}}
\newcommand{\tGabaA}{{\mathrm{GabaA}}}
\newcommand{\tACh}{{\mathrm{ACh}}}
\newcommand{\tS}{{\mathrm{S}}}
\newcommand{\tSK}{{\mathrm{SK}}}
\newcommand{\tH}{{\mathrm{H}}}
\newcommand{\tK}{{\mathrm{K}}}
\newcommand{\tKaD}{{\mathrm{KaD}}}
\newcommand{\tKD}{{\mathrm{KD}}}
\newcommand{\tL}{{\mathrm{L}}}
\newcommand{\INa}{{I_\mathrm{Na}}}
\newcommand{\INaT}{{I_\mathrm{NaT}}}
\newcommand{\ICa}{{I_{\mathrm{Ca}}}}
\newcommand{\ICaL}{{I_{\mathrm{CaL}}}}
\newcommand{\IKD}{{I_{\mathrm{KD}}}}
\newcommand{\IKaD}{{I_{\mathrm{KaD}}}}
\newcommand{\IK}{{I_{\mathrm{K}}}}
\newcommand{\IAMPA}{{I_{\mathrm{AMPA}}}}
\newcommand{\INMDA}{{I_{\mathrm{NMDA}}}}
\newcommand{\IGABA}{{I_{\mathrm{GABA}}}}
\newcommand{\INaKATP}{{I_{\mathrm{NaK}}}}
\newcommand{\INaK}{{I_{\mathrm{NaK}}}}
\newcommand{\INaKa}{{I_{\mathrm{NaKa}}}}	
\newcommand{\INaCaX}{{I_{\mathrm{NaCa}}}}
\newcommand{\ILeak}{{I_{\mathrm{L}}}}
\newcommand{\stimtop}{{\textit{Top}}}
\newcommand{\stimup}{{\textit{Up}}}
\newcommand{\stimdown}{{\textit{Down}}}
\newcommand{\diffop}[2]{{\partial_{#1} #2}}
%
\newcommand{\splitPage}[4]{
\begin{minipage}{#1\textwidth}
{#2}
\end{minipage}%
\begin{minipage}{#3\textwidth}
{#4}
\end{minipage}
}

\newcommand{\figref}[1]{{Fig.~\ref{#1}}}
\newcommand{\figtworefs}[2]{{Figs.~\ref{#1}~and~\ref{#2}}}
\newcommand{\figrefs}[2]{{Figs.~\ref{#1}-\ref{#2}}}
\newcommand{\req}[1]{{Eq.~\eqref{#1}}}
\newcommand{\rtwoeqs}[2]{{Eqs.~\eqref{#1}~and~\eqref{#2}}}
\newcommand{\reqs}[2]{{Eqs.~\eqref{#1}-\eqref{#2}}}
\newcommand{\eqn}[1]{\begin{equation}#1\end{equation}}
\newcommand{\eqna}[1]{\begin{eqnarray}#1\end{eqnarray}}
\newcommand{\smalleq}[1]
{\begin{equation}{\small #1}\end{equation}}
\newcommand{\smalleqna}[1]{ 
  \begin{small} 
    \begin{eqnarray} #1 \end{eqnarray} 
  \end{small}
}
\newcommand{\tinyeqna}[1]{ 
  \begin{tiny} 
    \begin{eqnarray} #1 \end{eqnarray} 
  \end{tiny}
}
% LaTeX beamer
\newcommand{\slide}[1]{\begin{frame}#1\end{frame}}
\newcommand{\from}[1]{{\tiny From #1.}}
\newcommand{\fuente}[1]{{\tiny #1}}
\newcommand{\source}[1]{{\tiny #1}}
\newcommand{\sS}[3]{{{#1}_{#2}^{#3}}}

\newcommand{\email}{\textrm{\Letter}}
\newcommand{\corrAuthor}{\textrm{\Letter}}
\newcommand{\insp}{{National Institute of Public Health}}
\newcommand{\cisei}{{Center for Research on Infectious Diseases}}
\newcommand{\imate}{{Mathematics Institute}}
\newcommand{\unam}{{National Autonomous University of Mexico}}
\newcommand{\ua}{{University of  Arizona}}
\newcommand{\uprc}{{University of Puerto Rico in Cayey}}
\newcommand{\mbi}{{Mathematical Biosciences Institute}}
\newcommand{\osu}{{Ohio State University}}
\newcommand{\asu}{{Arizona State University}}
\newcommand{\sols}{{School of Life Sciences}}
\newcommand{\smss}{{School of Mathematical Sciences and Statistics}}
\newcommand{\mcmsc}{{Mathematical, Computational, and Modelling Sciences Center}}
\newcommand{\shesc}{School of Human Evolution and Social Change}
%
 \newcommand{\INSP}{{Instituto Nacional de Salud Pública}}
\newcommand{\CISEI}{{Centro de Investigación Sobre Enfermedades Infecciosas}}
\newcommand{\UNAM}{{Universidad Nacional Aut\'onoma de M\'exico}}
\newcommand{\IM}{{Instituto de Matem\'aticas}}
\newcommand{\IF}{{Instituto de F\'isica}}
\newcommand{\FC}{{Facultad de Ciencias}}
\newcommand{\DM}{{Departamento de Matem\'aticas}}
% \newcommand{\ua}{{Universidad de  Arizona}}
% \newcommand{\asu}{{Universidad Estatal de Arizona}}
% \newcommand{\uprc}{{Universidad de Puerto Rico en Cayey}}
% \newcommand{\mbi}{{Instituto de Biociencias Matem\UTF{00C3}\UTF{00A1}ticas}}
% \newcommand{\osu}{{Universidad Estatal de Ohio}}
% ------------------------------------------------

%%%%%%%%%%%%%%%%%%%%%%%%%%%
% Edits and reviews
%%%%%%%%%%%%%%%%%%%%%%%%%%%
\newcommand{\aquimequede}{
\vspace{1cm} \textcolor{red}
{\textbf{AQUI ME QUEDE}} \\
\vspace{1cm}}
\newcommand{\mahv}[1]{\textcolor{gray}{$^{MAHV:}$}\textcolor{orange}{#1} }




%%%%%%%%%%%%%%%%%%%%%%%%%%%
% Colored sections
%%%%%%%%%%%%%%%%%%%%%%%%%%%
\newcommand{\headcolor}[1]{\textcolor{Bittersweet}{#1}}
\newcommand{\colorsection}[1]{\section*{\headcolor{#1}}}
\newcommand{\colorsubsection}[1]{\subsection*{\headcolor{#1}}}
\newcommand{\colorparagraph}[1]{\paragraph{\headcolor{#1}}}
\definecolor{lightGray}{rgb}{0.92,0.92,0.92}


%%%%%%%%%%%%%%%%%%%%%%%%%%%
% Figure settings and inclusion/exclusion of figures from the compilation
%%%%%%%%%%%%%%%%%%%%%%%%%%%

\newcommand{\figu}[3]{
\begin{figure}{\begin{center}#3\end{center}}\caption{#1}\label{#2}\end{figure}}
\newcommand{\tablFigu}[3]{
\begin{table}\caption{#1}\label{#2}\begin{center}{#3}\end{center}\end{table}}
%
\newcommand{\smallcaption}[1]{\begin{small}\caption{{#1}}\end{small}}
%\renewcommand{\caption}[1]{\caption{\begin{small}#1\end{small}}}
\usepackage{comment}
%\excludecomment{cond}
\includecomment{cond}
\newcommand{\showfigs}[1]{}
\begin{cond}
\renewcommand{\showfigs}[1]{\begin{center}#1\end{center}}
\end{cond}

% --------------------------------------
% mahvMacros
% --------------------------------------
% For supplements
% --------------------------------------
%\newcommand{\hbAppendixPrefix}{A}
%
%\renewcommand{\thefigure}{\hbAppendixPrefix\arabic{figure}}
%\setcounter{figure}{0}
%\renewcommand{\thetable}{\hbAppendixPrefix\arabic{table}} 
%\setcounter{table}{0}
%\renewcommand{\theequation}{\hbAppendixPrefix\arabic{equation}} 
%\setcounter{equation}{0}


\newenvironment{suppFig}[4]{
  \begin{figure}[h]
    \begin{center}
      {\includegraphics[#4]{#3}} \caption{\small #1} \label{#2}
    \end{center}
  \end{figure}}

\newenvironment{tab}[3]{
\begin{table}
\begin{center}
{#3} \caption{\small #1} \label{#2}
\end{center}
\end{table}}

% Operators
\DeclareMathOperator{\Tr}{Tr}
\newcommand{\re}[1]{ {\mathfrak{Re}} \left( {#1} \right)}
\newcommand{\im}[1]{ {\mathfrak{Im}} \left( {#1} \right)}
% Transpose upperscript
\newcommand{\transp}[1]{#1^{\mathsmaller T}}

% Column vectors. Usage:
% \colvector{a\\b\\c\\d\\e}
\newcommand{\colvector}[1]{\begin{pmatrix}#1\end{pmatrix}} 

% Column vectors. Usage:
% \colvec{5}{a}{b}{c}{d}{e}
\newcount\colveccount
\newcommand*\colvec[1]{
        \global\colveccount#1
        \begin{pmatrix}
        \colvecnext
}
\def\colvecnext#1{
        #1
        \global\advance\colveccount-1
        \ifnum\colveccount>0
                \\
                \expandafter\colvecnext
        \else
                \end{pmatrix}
        \fi
}

% ----------------------------------
% Code listing 
% ----------------------------------
%\lstdefinestyle{customPython}{
%  language=Python,
%  belowcaptionskip=1\baselineskip,
%  breaklines=true,
%  %frame=L,
%  xleftmargin=\parindent,
%  showstringspaces=false,
%  basicstyle=\footnotesize\ttfamily,
%  keywordstyle=\bfseries\color{green!40!black},
%  commentstyle=\itshape\color{purple!40!black},
%  identifierstyle=\color{blue},
%  stringstyle=\color{orange},
%}

%\newcommand<>{\hover}[1]{\uncover#2{%
% \begin{tikzpicture}[remember picture,overlay]%
% \draw[fill,opacity=0.4] (current page.south west)
% rectangle (current page.north east);
% \node at (current page.center) {#1};
% \end{tikzpicture}}
%}