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NAMESPACE
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NAMESPACE
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# Generated by roxygen2: do not edit by hand
export(GMT_to_list)
export(add_meta_data_cds)
export(backspin)
export(bimodality_coefficient)
export(calcKNNgraph_euclidean)
export(calcKNNgraph_pearson)
export(calc_dispersion_m2)
export(calculate_gene_dispersion)
export(check_input)
export(cluster_LSI)
export(cluster_PCA)
export(common_features)
export(density_peak)
export(detect_genes)
export(doubletFinder_v3)
export(doubletdetection)
export(enrichmentPlot)
export(errorLog)
export(estimate_corrected_score)
export(estimate_score)
export(extract_data)
export(file_rename)
export(find.pK)
export(get_assay)
export(get_ordering_genes)
export(get_selected_genes)
export(getmode)
export(groupSums)
export(import_scanpy_h5)
export(iterative_LSI)
export(kurtosis)
export(lighten_darken_color)
export(loadSoupX)
export(load_STARsolo_data)
export(load_cellranger_data_h5)
export(load_umap_model)
export(load_umap_model_depracated)
export(load_umap_model_new)
export(mnnCorrect_cds)
export(modelHomotypic)
export(parallel_paramSweep_v3)
export(paramSweep_v3)
export(plot_cells_m3addon)
export(plot_gene_dispersion)
export(plot_genes_violin)
export(plot_geneset)
export(plot_grouped_geneset)
export(plot_heatmap)
export(plot_pseudotime_heatmap)
export(plot_rho_delta)
export(projectLSI)
export(project_data)
export(pseudobulk)
export(red_dim_plot)
export(reduce_dimension)
export(remove_duplicated_rows)
export(returnFDR)
export(row_z_scores)
export(safe_subset)
export(save_umap_model)
export(save_umap_model_depracated)
export(save_umap_model_new)
export(scale_dims)
export(scrublet_R)
export(segment)
export(select_genes)
export(set_ordering_genes)
export(set_selected_genes)
export(sfc)
export(skewness)
export(spRing)
export(sparseRowVariances)
export(split_plot)
export(ssgsea)
export(summarizeSweep)
export(svd_lsi)
export(tf_idf_transform)
export(tf_idf_transform_v2)
export(trimap)
import(Matrix)
import(Rcpp)
import(ggplot2)
import(hdf5r)
import(monocle3)
import(pheatmap)
importFrom(DelayedMatrixStats,rowMeans2)
importFrom(DelayedMatrixStats,rowVars)
importFrom(Hmisc,cut2)
importFrom(KernSmooth,bkde)
importFrom(Matrix,Matrix)
importFrom(Matrix,colSums)
importFrom(Matrix,readMM)
importFrom(Matrix,rowSums)
importFrom(Matrix,sparseMatrix)
importFrom(Matrix,t)
importFrom(ROCR,performance)
importFrom(ROCR,prediction)
importFrom(Rcpp,evalCpp)
importFrom(S4Vectors,DataFrame)
importFrom(Seurat,Read10X)
importFrom(batchelor,fastMNN)
importFrom(data.table,as.data.table)
importFrom(data.table,fread)
importFrom(densityClust,densityClust)
importFrom(densityClust,findClusters)
importFrom(dplyr,group_by)
importFrom(fgsea,calcGseaStat)
importFrom(fields,rdist)
importFrom(ggplot2,ggplot)
importFrom(grid,rasterGrob)
importFrom(gridExtra,grid.arrange)
importFrom(igraph,get.adjacency)
importFrom(igraph,graph_from_adjacency_matrix)
importFrom(igraph,layout_with_drl)
importFrom(matrixStats,colRanks)
importFrom(monocle3,new_cell_data_set)
importFrom(monocle3,normalized_counts)
importFrom(pbmcapply,pbmclapply)
importFrom(png,readPNG)
importFrom(reshape2,melt)
importFrom(reticulate,py_available)
importFrom(reticulate,source_python)
importFrom(reticulate,use_python)
importFrom(stats,as.dist)
importFrom(stats,cor)
importFrom(stats,cutree)
importFrom(stats,sd)
useDynLib(m3addon)