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ABFEP input structures and results

A set of input structures for validation of ABFEP and spreadsheets containing the results.

Contents

InputFiles_ABFEP/

Input structures for ABFEP calculations, including two sets: one for the congeneric compound series for eight proteins (InputFiles_ABFEP/Congeneric_8proteins_ABFEP), and the other for the virtual screening of JAK2 (InputFiles_ABFEP/JAK2_VS_ABFEP).

Results_ABFEP/

Results of ABFEP calculations: one spreadsheet for the congeneric compound series for eight proteins (Results_ABFEP/Congeneric_8proteins_ABFEP.xlsx), and the other for the virtual screening of JAK2 (Results_ABFEP/JAK2_VS_ABFEP.xlsx).

abfep_sub.sh

The shell script to submit ABFEP simulations with input structures in InputFiles_ABFEP by using the FEP+ program in the Schrodinger Suite.