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new recipe illustrating power analysis (possibly with microbiome data) #20

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gregcaporaso opened this issue Sep 24, 2014 · 5 comments

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@gregcaporaso
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Depends on skbio's #636.

@jwdebelius
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I'd like to work on something like this.

Could this also document how to use statsmodels.stats.power to extrapolate the curves, since I consider that a really important functionality but couldn't incorporate it in skbio because of the dependency?

@gregcaporaso
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That sounds really cool, I'd love to see that. Can I sign you up for
writing one of these sometime within the next 10 weeks for the recipe of
the week series
http://microbe.net/2014/09/23/announcing-the-scikit-bio-cookbook-recipe-of-the-week-series/?
The only catch is that this code would need to make it into an skbio
release first, so would likely need to be late in the series.

On Wed, Sep 24, 2014 at 12:12 AM, J W Debelius [email protected]
wrote:

I'd like to work on something like this.

Could this also document how to use statsmodels.stats.power to extrapolate
the curves, since I consider that a really important functionality but
couldn't incorporate it in skbio because of the dependency?

Reply to this email directly or view it on GitHub
#20 (comment)
.

@jwdebelius
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Yes. I'd be happy to do it. Are there a set of datasets people are already working with as examples?

@rob-knight
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antonio should have for evident

On Sep 24, 2014, at 1:08 PM, J W Debelius <[email protected]mailto:[email protected]> wrote:

Yes. I'd be happy to do it. Are there a set of datasets people are already working with as examples?


Reply to this email directly or view it on GitHubhttps://github.com//issues/20#issuecomment-56722238.

@antgonza
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Yup, here: https://github.com/biocore/Evident/tree/master/data, let me know
if you have any questions.

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