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sc.tl.rank_genes_groups on integrated counts #3385

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Prakrithi-P opened this issue Nov 23, 2024 · 1 comment

Prakrithi-P commented Nov 23, 2024

Hi
Can I run sc.tl.rank_genes_groups on adata.X after sc.external.pp.harmony_integrate? Why adn why not?

Thanks,
Prakrithi

Member

Zethson commented Nov 28, 2024

Hi,

please ask usage questions on our discourse: https://discourse.scverse.org/

Zethson closed this as completed

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