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Most columns added to adata.obs should probably be well-defined categoricals
Booleans should be booleans / or categoricals, and not strings
nan should be nan and not "nan". Categoricals do support nan, but there was an issue with how this is implemented in anndata, maybe this needs to be fixed upstream.
The text was updated successfully, but these errors were encountered:
Anndata supports now categoricals with nan values.
There are still some issues with anndata saving booleans.
Also anndata can't save object dtypes, so we need to make sure to convert those to categoricals appropriately.
adata.obs
should probably be well-defined categoricalsnan
should benan
and not"nan"
. Categoricals do supportnan
, but there was an issue with how this is implemented inanndata
, maybe this needs to be fixed upstream.The text was updated successfully, but these errors were encountered: