README.txt

------Generating Docs
Documentation is easily generated using M2HTML (http://www.artefact.tk/software/matlab/m2html/)

To regenerate the documentation, delete the 'docs' folder then run the following MATLAB command in the CometsToolbox folder's parent directory.
	m2html('mfiles','CometsToolbox', 'htmldir','CometsToolbox/docs', 'recursive','on', 'global','on','template','frame','index','menu')


------LEGAL

Scripts included here as part of the COMETS Toolbox are Copyright (C) 2016 Daniel Segre, Bioinformatics Program, Boston University, Boston, MA. All rights reserved. E-mail: <dsegre@bu.edu>. COMETS scripts are available under the terms of the GNU Lesser General Public License version 3.
COMETS (Computation Of Microbial Ecosystems in Time and Space) is Copyright (C) 2014 Daniel Segre, Bioinformatics Program, Boston University, Boston, MA. All rights reserved. E-mail: <dsegre@bu.edu>. COMETS is available under the terms of the GNU General Public License version 3.

Comets-toolbox is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for more details.

Comets-toolbox is developed with non-commercial use in mind and is presented as-is. To inquire about collaborations or commercial usage and development, please contact us at <comets@bu.edu>.

 M2HTML - Documentation System for Matlab .m files in HTML Copyright (C) 2003-2005 Guillaume Flandin <Guillaume@artefact.tk> and is included unmodified under the GNU GPL version 2
 
 Paint4Net (Paint for Network)  Copyright (C) 2009 Latvia University of Agriculture and is included unmodified under the NGU GPL version 3
 
 mksqlite (A MATLAB Mex-DLL to SQLite Databases) https://sourceforge.net/projects/mksqlite/ is included unmodified under an LGPL license

------Contact
The COMETS toolbox is currently maintained by Michael Quintin. E-mail: mquintin@bu.edu