HaploGrep v2.1.9

• adding testcases
• improve indel identification from VCF

v2.1.8

• Introduce new lineage option

HaploGrep v2.1.7

• add indels

v2.1.6

• Improved VCF speed

HaploGrep v.2.1.5

• add chip parameter if VCF data comes from genotyping arrays

HaploGrep 2.1.4

• Simplify command

v2.1.3

• First GitHub version including latest source

1.0.1

Haplogrep Command Line version supporting different metrics (1:default, 2:hamming, 3: jaccard)

wget https://github.com/seppinho/haplogrep-cmd/releases/download/1.0.1/toolbox-1.0.1.jar
java -jar toolbox-1.0.1.jar haplogrep --in <hsd> --format hsd --phylotree 17 --out <out-file> --metric 1