All notable changes to this project will be documented in this file.
The format is based on Keep a Changelog, and this project adheres to Semantic Versioning.
- Don't accumulate limits if sequence is empty.
- Pin bokeh correctly to <3.0.0. in conda/meta.yaml
- Pin bokeh to <3.0.0. in conda/meta.yaml
- Pin bokeh to <3.0.0.
- title lead can be customised
- enable html escaping to be turned off in the table function
- Division by zero error in fastqcat component when summary file empty.
- typo in fastcat section
- version fix
- brand-blue to brand-primary
- Corrected accounting error in cumulative depth from BED plot
- Cumulative depth coverage plots
- Title background
- Custom ONT/OND css for reports
- Custom ONT/OND color classes
- Added ability to turn off about section
- Cumulative depth plots
- Horizontal bar plots
- Typo in top padding for title.
- Nextclade web component version bump to 1.0.2.
- Removed filterable table code.
- Depth coverage graph component.
- Encoding issue in report.
- Multiple FilterableTables incorrect display issue.
- Revert font-awesome library to dynamic web loading.
- Moved dynamically loaded JS and CSS resources to local files for offline use.
- FilterableTable report component.
- CI update.
- Add sigfig to conda yaml.
- Add sigfig to conda yaml.
- Bootstrap alerts now a section that can be added to a report.
- disable SI prefixes on percentage values in graphics.infographic
- Nextclade web component updated to 0.1.5.
- JSON export function that creates truly standalone document.
- Parameterise xlim for fastcat read length plot.
- Added wf_param to simple report components.
- Incorrect directory listing in version report table.
- Clone validation report component removed as not generically useful.
- Demonstration program now part of common CLI.
- Started collection of "simple" report components.
- Rebuilt package to be smaller.
facet_gridfunction can now create a single-facet plot.- Helper function to export JSX file for import into MDX markdown.
- Table class that uses simple table instead of bokeh.
- Add logging helper functions to util.
- Decorator which plots a null graph if plotting function fails.
- Ability to pass workflow revision and commit.
- Abbreviated legend names for visibility in overall BP summary.
- Updated documentation in coverage panel to match fixes in mapula.
- Standard workflow report layout for ONT workflows.
- Fixed a bug in clone validation report parsing maf files.
- Added a minimal reporting component for wf-clone-validation.
- Updated version of nextflow javascript component.
- Correct conda package versioning.
- Added missing module.
- Read stats module report component based on fastcat.
- Refactored Nextclade and mapula report components.
- Deployment to epi2melabs conda channel.
- Report component for wf-alignment specific mapula output.
- Additional colour definitions to utils.Colors.
- utils.Colors is now instance of a vanilla object not an Enum.
- Defined API to create standardised report sections/components.
- Report component for bcftools stats output.
- Allow colour specification of bar plots.
- Ability to drop Nextclade graphics into HTML reports.
- Option to karyogram to specify chromosome names.
- Option to tie axes in multi-facet plots.
- Fix facet layout for case with no data in a facet.
- zlim argument to heatmap2 function to control control scale limits.
- Layouts module for ggplot-like functionality