fix bug of forgetting to close files...

shenwei356 · Jul 27, 2018 · 0425b99 · 0425b99
1 parent dcef0c9
commit 0425b99
Showing 1 changed file with 4 additions and 2 deletions.
diff --git a/unikmer/cmd/diff.go b/unikmer/cmd/diff.go
@@ -116,7 +116,6 @@ var diffCmd = &cobra.Command{
 
 		infh, err = xopen.Ropen(file)
 		checkError(err)
-		defer infh.Close()
 
 		reader, err = unikmer.NewReader(infh)
 		checkError(err)
@@ -135,6 +134,8 @@ var diffCmd = &cobra.Command{
 			m[kcode.Code] = false
 		}
 
+		infh.Close()
+
 		if opt.Verbose {
 			log.Infof("%d Kmers loaded", len(m))
 		}
@@ -229,7 +230,6 @@ var diffCmd = &cobra.Command{
 
 					infh, err = xopen.Ropen(file)
 					checkError(err)
-					defer infh.Close()
 
 					reader, err = unikmer.NewReader(infh)
 					checkError(err)
@@ -253,6 +253,8 @@ var diffCmd = &cobra.Command{
 						}
 					}
 
+					infh.Close()
+
 					// remove seen kmers
 					for code, mark = range m1 {
 						if mark {