clean code

shenwei356 · Jul 3, 2020 · 1fb4bbb · 1fb4bbb
1 parent 84091af
commit 1fb4bbb
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Showing 2 changed files with 1 addition and 5 deletions.
diff --git a/unikmer/cmd/merge.go b/unikmer/cmd/merge.go
@@ -140,7 +140,6 @@ Tips:
 		var infh *bufio.Reader
 		var r *os.File
 		var reader *unikmer.Reader
-		// var nUnequalK, nNotConsC, nNotSorted int
 		var k int = -1
 		var canonical bool
 		var hasTaxid bool
@@ -203,9 +202,6 @@ Tips:
 
 			}()
 		}
-		// if nNotSorted > 0 || nUnequalK > 0 || nNotConsC > 0 {
-		// 	checkError(fmt.Errorf("please check chunk files: %d with different K, %d with different canonical flag, %d not sorted", nUnequalK, nNotConsC, nNotSorted))
-		// }
 
 		files = _files
 

diff --git a/unikmer/cmd/root.go b/unikmer/cmd/root.go
@@ -104,7 +104,7 @@ func init() {
 	RootCmd.PersistentFlags().Uint32P("max-taxid", "", 1<<32-1, "for smaller taxids, we can use less space to store taxids. default value is 1<<32-1, that's enough for NCBI Taxonomy taxids")
 	RootCmd.PersistentFlags().BoolP("ignore-taxid", "I", false, "ignore taxonomy information")
 	RootCmd.PersistentFlags().StringP("data-dir", "", defaultDataDir, "directory containing NCBI Taxonomy files, including nodes.dmp, names.dmp, merged.dmp and delnodes.dmp")
-	// RootCmd.PersistentFlags().BoolP("cache-lca", "", false, "cache LCA queries")
+
 }
 
 const helpSort = "sort k-mers, this significantly reduce file size for k<=25. This flag overwrites global flag -c/--compact"