diff --git a/ds_tb1/sub-tb1tfl/fmap/sub-tb1tfl_TB1TFL_coronal.json b/ds_tb1/sub-tb1tfl/fmap/sub-tb1tfl_TB1TFL_coronal.json deleted file mode 100644 index d66a45f..0000000 --- a/ds_tb1/sub-tb1tfl/fmap/sub-tb1tfl_TB1TFL_coronal.json +++ /dev/null @@ -1,74 +0,0 @@ -{ - "Modality": "MR", - "MagneticFieldStrength": 7, - "ImagingFrequency": 297.2, - "Manufacturer": "Siemens", - "ManufacturersModelName": "Investigational_Device_7T", - "InstitutionName": "Hospital", - "InstitutionalDepartmentName": "Department", - "InstitutionAddress": "Street StreetNo,City,District,CA,ZIP", - "DeviceSerialNumber": "79017", - "StationName": "AWP79017", - "BodyPartExamined": "CSPINE", - "PatientPosition": "HFS", - "ProcedureStepDescription": "Development^Dr. Cohen-Adad", - "SoftwareVersions": "syngo MR E12", - "MRAcquisitionType": "2D", - "SeriesDescription": "standard_cor", - "ProtocolName": "standard_cor", - "ScanningSequence": "GR", - "SequenceVariant": "SK\\SP", - "SequenceName": "*tfl2d1_16", - "SeriesNumber": 54, - "AcquisitionTime": "12:19:4.552500", - "AcquisitionNumber": 1, - "ImageComments": "flip angle map, TraRefAmpl: 400.0 V", - "SliceThickness": 5, - "SpacingBetweenSlices": 10, - "SAR": 0.00701462, - "EchoTime": 0.00163, - "RepetitionTime": 3.76, - "SpoilingState": true, - "FlipAngle": 5, - "PartialFourier": 1, - "BaseResolution": 64, - "ShimSetting": [ - 133, - -20, - 10, - -75, - 9, - -147, - -112, - -224 ], - "TxRefAmp": 400, - "PhaseResolution": 1, - "ReceiveCoilName": "NP11_ACDC_SPINE", - "ReceiveCoilActiveElements": "1H;1H;1H;1H;1H;1H;1H;1H;1H;1H;1H;1H;1H;1H;1H;1H;1H;1H;1H;1H", - "PulseSequenceDetails": "%SiemensSeq%\\tfl_rfmap", - "RefLinesPE": 16, - "CoilCombinationMethod": "Sum of Squares", - "ConsistencyInfo": "N4_VE12U_LATEST_20181126", - "MatrixCoilMode": "GRAPPA", - "MultibandAccelerationFactor": 5, - "PercentPhaseFOV": 218.75, - "PercentSampling": 100, - "PhaseEncodingSteps": 140, - "AcquisitionMatrixPE": 140, - "ReconMatrixPE": 140, - "ParallelReductionFactorInPlane": 2, - "PixelBandwidth": 440, - "DwellTime": 1.78e-05, - "PhaseEncodingDirection": "i", - "ImageOrientationPatientDICOM": [ - 1, - 0, - 0, - 0, - 0, - -1 ], - "ImageOrientationText": "Cor", - "InPlanePhaseEncodingDirectionDICOM": "ROW", - "ConversionSoftware": "dcm2niix", - "ConversionSoftwareVersion": "v1.0.20211006" -} diff --git a/ds_tb1/sub-tb1tfl/fmap/sub-tb1tfl_TB1TFL_coronal.nii.gz b/ds_tb1/sub-tb1tfl/fmap/sub-tb1tfl_TB1TFL_coronal.nii.gz deleted file mode 100644 index 000cbe6..0000000 Binary files a/ds_tb1/sub-tb1tfl/fmap/sub-tb1tfl_TB1TFL_coronal.nii.gz and /dev/null differ diff --git a/ds_tb1/sub-tb1tfl/fmap/sub-tb1tfl_TB1TFL_sagittal.json b/ds_tb1/sub-tb1tfl/fmap/sub-tb1tfl_TB1TFL_sagittal.json deleted file mode 100644 index d98937b..0000000 --- a/ds_tb1/sub-tb1tfl/fmap/sub-tb1tfl_TB1TFL_sagittal.json +++ /dev/null @@ -1,74 +0,0 @@ -{ - "Modality": "MR", - "MagneticFieldStrength": 7, - "ImagingFrequency": 297.2, - "Manufacturer": "Siemens", - "ManufacturersModelName": "Investigational_Device_7T", - "InstitutionName": "Hospital", - "InstitutionalDepartmentName": "Department", - "InstitutionAddress": "Street StreetNo,City,District,CA,ZIP", - "DeviceSerialNumber": "79017", - "StationName": "AWP79017", - "BodyPartExamined": "CSPINE", - "PatientPosition": "HFS", - "ProcedureStepDescription": "Development^Dr. Cohen-Adad", - "SoftwareVersions": "syngo MR E12", - "MRAcquisitionType": "2D", - "SeriesDescription": "standard_sag", - "ProtocolName": "standard_sag", - "ScanningSequence": "GR", - "SequenceVariant": "SK\\SP", - "SequenceName": "*tfl2d1_16", - "SeriesNumber": 55, - "AcquisitionTime": "12:21:7.597500", - "AcquisitionNumber": 1, - "ImageComments": "flip angle map, TraRefAmpl: 400.0 V", - "SliceThickness": 5, - "SpacingBetweenSlices": 10, - "SAR": 0.00464767, - "EchoTime": 0.00163, - "RepetitionTime": 3.76, - "SpoilingState": true, - "FlipAngle": 5, - "PartialFourier": 1, - "BaseResolution": 64, - "ShimSetting": [ - 133, - -20, - 10, - -75, - 9, - -147, - -112, - -224 ], - "TxRefAmp": 400, - "PhaseResolution": 1, - "ReceiveCoilName": "NP11_ACDC_SPINE", - "ReceiveCoilActiveElements": "1H;1H;1H;1H;1H;1H;1H;1H;1H;1H;1H;1H;1H;1H;1H;1H;1H;1H;1H;1H", - "PulseSequenceDetails": "%SiemensSeq%\\tfl_rfmap", - "RefLinesPE": 16, - "CoilCombinationMethod": "Sum of Squares", - "ConsistencyInfo": "N4_VE12U_LATEST_20181126", - "MatrixCoilMode": "GRAPPA", - "MultibandAccelerationFactor": 5, - "PercentPhaseFOV": 81.25, - "PercentSampling": 100, - "PhaseEncodingSteps": 52, - "AcquisitionMatrixPE": 52, - "ReconMatrixPE": 52, - "ParallelReductionFactorInPlane": 2, - "PixelBandwidth": 440, - "DwellTime": 1.78e-05, - "PhaseEncodingDirection": "i", - "ImageOrientationPatientDICOM": [ - 0, - 1, - 0, - 0, - 0, - -1 ], - "ImageOrientationText": "Sag", - "InPlanePhaseEncodingDirectionDICOM": "ROW", - "ConversionSoftware": "dcm2niix", - "ConversionSoftwareVersion": "v1.0.20211006" -} diff --git a/ds_tb1/sub-tb1tfl/fmap/sub-tb1tfl_TB1TFL_sagittal.nii.gz b/ds_tb1/sub-tb1tfl/fmap/sub-tb1tfl_TB1TFL_sagittal.nii.gz deleted file mode 100644 index 786a852..0000000 Binary files a/ds_tb1/sub-tb1tfl/fmap/sub-tb1tfl_TB1TFL_sagittal.nii.gz and /dev/null differ diff --git a/ds_tb1/sub-tb1tfl/rfmap/sub-tb1tfl_run-01_TB1map_uncombined.json b/ds_tb1/sub-tb1tfl/rfmap/sub-tb1tfl_run-01_TB1map_uncombined.json new file mode 100644 index 0000000..0f30bca --- /dev/null +++ b/ds_tb1/sub-tb1tfl/rfmap/sub-tb1tfl_run-01_TB1map_uncombined.json @@ -0,0 +1 @@ +{"Modality": "MR", "MagneticFieldStrength": 7, "ImagingFrequency": 297.2, "Manufacturer": "Siemens", "ManufacturersModelName": "Investigational_Device_7T", "InstitutionName": "Hospital", "InstitutionalDepartmentName": "Department", "InstitutionAddress": "Street StreetNo,City,District,CA,ZIP", "DeviceSerialNumber": "79017", "StationName": "AWP79017", "BodyPartExamined": "CSPINE", "PatientPosition": "HFS", "ProcedureStepDescription": "Development^Dr. Cohen-Adad", "SoftwareVersions": "syngo MR E12", "MRAcquisitionType": "2D", "SeriesDescription": "standard_tra", "ProtocolName": "standard_tra", "ScanningSequence": "GR", "SequenceVariant": "SK\\SP", "SequenceName": "*tfl2d1_16", "SeriesNumber": 53, "AcquisitionTime": "12:16:59.472500", "AcquisitionNumber": 1, "ImageComments": "Complex uncombined B1+ map (nT/V)", "SliceThickness": 7, "SpacingBetweenSlices": 14, "SAR": 0.00443249, "EchoTime": 0.00153, "RepetitionTime": 3.76, "SpoilingState": true, "FlipAngle": 5, "PartialFourier": 1, "BaseResolution": 64, "ShimSetting": [133, -20, 10, -75, 9, -147, -112, -224], "TxRefAmp": 400, "PhaseResolution": 1, "ReceiveCoilName": "NP11_ACDC_SPINE", "ReceiveCoilActiveElements": "1H;1H;1H;1H;1H;1H;1H;1H;1H;1H;1H;1H;1H;1H;1H;1H;1H;1H;1H;1H", "PulseSequenceDetails": "%SiemensSeq%\\tfl_rfmap", "RefLinesPE": 16, "CoilCombinationMethod": "Sum of Squares", "ConsistencyInfo": "N4_VE12U_LATEST_20181126", "MatrixCoilMode": "GRAPPA", "MultibandAccelerationFactor": 5, "PercentPhaseFOV": 68.75, "PercentSampling": 100, "PhaseEncodingSteps": 44, "AcquisitionMatrixPE": 44, "ReconMatrixPE": 44, "ParallelReductionFactorInPlane": 2, "PixelBandwidth": 440, "DwellTime": 1.78e-05, "PhaseEncodingDirection": "j-", "ImageOrientationPatientDICOM": [-1, 0, 0, 0, 1, 0], "ImageOrientationText": "Tra", "InPlanePhaseEncodingDirectionDICOM": "COL", "ConversionSoftware": "dcm2niix", "ConversionSoftwareVersion": "v1.0.20211006", "Dcm2bidsVersion": "2.1.4"} \ No newline at end of file diff --git a/ds_tb1/sub-tb1tfl/rfmap/sub-tb1tfl_run-01_TB1map_uncombined.nii.gz b/ds_tb1/sub-tb1tfl/rfmap/sub-tb1tfl_run-01_TB1map_uncombined.nii.gz new file mode 100644 index 0000000..df3e228 Binary files /dev/null and b/ds_tb1/sub-tb1tfl/rfmap/sub-tb1tfl_run-01_TB1map_uncombined.nii.gz differ diff --git a/ds_tb1/sub-tb1tfl/rfmap/sub-tb1tfl_run-02_TB1map_uncombined.json b/ds_tb1/sub-tb1tfl/rfmap/sub-tb1tfl_run-02_TB1map_uncombined.json new file mode 100644 index 0000000..8c7908f --- /dev/null +++ b/ds_tb1/sub-tb1tfl/rfmap/sub-tb1tfl_run-02_TB1map_uncombined.json @@ -0,0 +1 @@ +{"Modality": "MR", "MagneticFieldStrength": 7, "ImagingFrequency": 297.2, "Manufacturer": "Siemens", "ManufacturersModelName": "Investigational_Device_7T", "InstitutionName": "Hospital", "InstitutionalDepartmentName": "Department", "InstitutionAddress": "Street StreetNo,City,District,CA,ZIP", "DeviceSerialNumber": "79017", "StationName": "AWP79017", "BodyPartExamined": "CSPINE", "PatientPosition": "HFS", "ProcedureStepDescription": "Development^Dr. Cohen-Adad", "SoftwareVersions": "syngo MR E12", "MRAcquisitionType": "2D", "SeriesDescription": "standard_cor", "ProtocolName": "standard_cor", "ScanningSequence": "GR", "SequenceVariant": "SK\\SP", "SequenceName": "*tfl2d1_16", "SeriesNumber": 54, "AcquisitionTime": "12:19:4.552500", "AcquisitionNumber": 1, "ImageComments": "Complex uncombined B1+ map (nT/V)", "SliceThickness": 5, "SpacingBetweenSlices": 10, "SAR": 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"ConversionSoftwareVersion": "v1.0.20211006", "Dcm2bidsVersion": "2.1.4"} \ No newline at end of file diff --git a/ds_tb1/sub-tb1tfl/rfmap/sub-tb1tfl_run-02_TB1map_uncombined.nii.gz b/ds_tb1/sub-tb1tfl/rfmap/sub-tb1tfl_run-02_TB1map_uncombined.nii.gz new file mode 100644 index 0000000..71525d3 Binary files /dev/null and b/ds_tb1/sub-tb1tfl/rfmap/sub-tb1tfl_run-02_TB1map_uncombined.nii.gz differ diff --git a/ds_tb1/sub-tb1tfl/rfmap/sub-tb1tfl_run-03_TB1map_uncombined.json b/ds_tb1/sub-tb1tfl/rfmap/sub-tb1tfl_run-03_TB1map_uncombined.json new file mode 100644 index 0000000..876dd78 --- /dev/null +++ b/ds_tb1/sub-tb1tfl/rfmap/sub-tb1tfl_run-03_TB1map_uncombined.json @@ -0,0 +1 @@ +{"Modality": "MR", "MagneticFieldStrength": 7, "ImagingFrequency": 297.2, "Manufacturer": "Siemens", "ManufacturersModelName": "Investigational_Device_7T", "InstitutionName": "Hospital", "InstitutionalDepartmentName": "Department", "InstitutionAddress": "Street StreetNo,City,District,CA,ZIP", 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a/ds_tb1/sub-tb1tfl/fmap/sub-tb1tfl_TB1TFL_axial.json b/ds_tb1/tmp_dcm2bids/helper/053_tmp_standard_tra_20210928093219.json similarity index 100% rename from ds_tb1/sub-tb1tfl/fmap/sub-tb1tfl_TB1TFL_axial.json rename to ds_tb1/tmp_dcm2bids/helper/053_tmp_standard_tra_20210928093219.json diff --git a/ds_tb1/sub-tb1tfl/fmap/sub-tb1tfl_TB1TFL_axial.nii.gz b/ds_tb1/tmp_dcm2bids/helper/053_tmp_standard_tra_20210928093219.nii.gz similarity index 100% rename from ds_tb1/sub-tb1tfl/fmap/sub-tb1tfl_TB1TFL_axial.nii.gz rename to ds_tb1/tmp_dcm2bids/helper/053_tmp_standard_tra_20210928093219.nii.gz