From 0cb5b12105bcde89ce58c192272cfd97d30a984d Mon Sep 17 00:00:00 2001
From: jcohenadad <jcohen@polymtl.ca>
Date: Fri, 22 Dec 2023 17:21:37 -0500
Subject: [PATCH] Added QC report cell

---
 Analysis.ipynb | 12 +++++++++++-
 1 file changed, 11 insertions(+), 1 deletion(-)

diff --git a/Analysis.ipynb b/Analysis.ipynb
index 0dcb52a..cf36ad1 100644
--- a/Analysis.ipynb
+++ b/Analysis.ipynb
@@ -98,10 +98,20 @@
     "    !sct_deepseg_sc -i {subject}_acq-CoV_T2starw.nii.gz -c t2 -qc {path_qc}"
    ]
   },
+  {
+   "cell_type": "markdown",
+   "id": "49c57187",
+   "metadata": {},
+   "source": [
+    "## Verify quality control (QC) report\n",
+    "\n",
+    "Open the QC report located under `ds004906/qc/index.html`. Make sure the segmentations and registrations are correct before resuming the analysis."
+   ]
+  },
   {
    "cell_type": "code",
    "execution_count": null,
-   "id": "17223063",
+   "id": "1809bb43",
    "metadata": {},
    "outputs": [],
    "source": [