diff --git a/README.md b/README.md index a5c608d..93a5ced 100644 --- a/README.md +++ b/README.md @@ -1,18 +1,25 @@ # rf-shimming-7t [![DOI Badge](https://img.shields.io/badge/DOI-10.18112%2Fopenneuro.ds004906-blue)](https://openneuro.org/datasets/ds004906) +[![Open In Colab](https://colab.research.google.com/assets/colab-badge.svg)](https://colab.research.google.com/github/shimming-toolbox/rf-shimming-7t/blob/main/data_processing.ipynb) -Repository for the paper "B1+ shimming in the cervical spinal cord at 7T" +Reproducible Notebook for the paper "B1+ shimming in the cervical spinal cord at 7T" -## How to use +## How to run with Google Colab -Clone repository +Click on the badge "Open in Colab" ☝️ + +## How to run with Jupyter Notebook + +Install [Spinal Cord Toolbox](https://spinalcordtoolbox.com/user_section/installation.html) + +Clone this repository ~~~ git clone https://github.com/shimming-toolbox/rf-shimming-7t.git cd rf-shimming-7t ~~~ -Install dependencies (assuming Python is already installed) +Install Python dependencies (assuming Python is already installed) ~~~ pip install -r requirements.txt ~~~ diff --git a/requirements.txt b/requirements.txt index 7db0149..cd3607c 100644 --- a/requirements.txt +++ b/requirements.txt @@ -1,5 +1,4 @@ datalad -json matplotlib nibabel notebook