From 9cddd3ea9ff30a3d1e5b11939e74eeed59208e54 Mon Sep 17 00:00:00 2001
From: jcohenadad <jcohen@polymtl.ca>
Date: Wed, 10 Jan 2024 11:54:22 -0500
Subject: [PATCH] Added info about QC review

---
 data_processing.ipynb | 16 ++++++++--------
 1 file changed, 8 insertions(+), 8 deletions(-)

diff --git a/data_processing.ipynb b/data_processing.ipynb
index 687ae68..7c1d43e 100644
--- a/data_processing.ipynb
+++ b/data_processing.ipynb
@@ -64,9 +64,7 @@
     "- Convert the B1 map to nT/V units\n",
     "- Extract the B1 map value within the spinal cord\n",
     "\n",
-    "```{note}\n",
-    "Slow processes are indicated with the emoji ⏳\n",
-    "```"
+    ">Slow processes are indicated with the emoji ⏳"
    ]
   },
   {
@@ -96,7 +94,7 @@
   {
    "cell_type": "code",
    "execution_count": null,
-   "id": "425724d9",
+   "id": "bc5a2ec0",
    "metadata": {},
    "outputs": [],
    "source": [
@@ -108,7 +106,7 @@
   {
    "cell_type": "code",
    "execution_count": null,
-   "id": "d774d3c0",
+   "id": "5efab0b8",
    "metadata": {},
    "outputs": [],
    "source": [
@@ -126,11 +124,11 @@
   {
    "cell_type": "code",
    "execution_count": null,
-   "id": "83822d93",
+   "id": "4238e452",
    "metadata": {},
    "outputs": [],
    "source": [
-    "# Install SCT\n",
+    "# Install SCT ⏳\n",
     "# ℹ️ No need to run this cell if you run this notebook locally and already have SCT installed.\n",
     "\n",
     "!git clone --depth 1 https://github.com/spinalcordtoolbox/spinalcordtoolbox.git\n",
@@ -204,7 +202,9 @@
    "source": [
     "## Verify QC report (GRE segmentation)\n",
     "\n",
-    "Open the quality control (QC) report located under `ds004906/qc/index.html`. Make sure the spinal cord segmentations are correct before resuming the analysis."
+    "Open the quality control (QC) report located under `ds004906/qc/index.html`. Make sure the spinal cord segmentations are correct before resuming the analysis.\n",
+    "\n",
+    ">If you run this notebook on Google Colab, you can skip as the QC report cannot easily be viewed from Google Colab. If you *really* want to see the QC report, you can create a cell where you zip the 'qc/' folder, then you can download it on your local station and open the index.html file. \n"
    ]
   },
   {