diff --git a/data_processing.ipynb b/data_processing.ipynb index 763ad94..30df0da 100644 --- a/data_processing.ipynb +++ b/data_processing.ipynb @@ -117,30 +117,19 @@ "metadata": {}, "outputs": [], "source": [ - "# Install packages on system\n", - "# ℹ️ No need to run this cell if you run this notebook locally and already have these dependencies installed.\n", + "# ⚠️ No need to run this cell if you run this notebook locally and already have these dependencies installed.\n", "\n", + "# Install packages on system\n", "!sudo apt-get update\n", "!sudo apt-get install git-annex\n", "\n", "# Install Python libaries\n", "!wget -O requirements.txt https://raw.githubusercontent.com/shimming-toolbox/rf-shimming-7t/main/requirements.txt\n", - "!pip install -r requirements.txt" - ] - }, - { - "cell_type": "code", - "execution_count": null, - "id": "4238e452", - "metadata": {}, - "outputs": [], - "source": [ - "# Install SCT ⏳\n", - "# ℹ️ No need to run this cell if you run this notebook locally and already have SCT installed.\n", + "!pip install -r requirements.txt\n", "\n", + "# Install SCT ⏳\n", "!git clone --depth 1 https://github.com/spinalcordtoolbox/spinalcordtoolbox.git\n", "!yes | spinalcordtoolbox/install_sct\n", - "# Add SCT's binaries to environment PATH\n", "os.environ['PATH'] += f\":/content/spinalcordtoolbox/bin\"" ] },