.gitlab-ci.yml

# This is the Gradle build system for JVM applications
# https://gradle.org/
# https://github.com/gradle/gradle
#image: gradle:alpine
default:
  image: gradle:8.12-jdk21
#  image: registry.gitlab.com/bright-giant/docker-images/ubuntu-jdk-lapack:ubuntu-zulu-21
  tags: [$RUNNER_TAGS]

# Disable the Gradle daemon for Continuous Integration servers as correctness
# is usually a priority over speed in CI environments. Using a fresh
# runtime for each build is more reliable since the runtime is completely
# isolated from any previous builds.
stages:
#  - test-libs
#  - build-publish-libs
  - libs
  - build-app
  - test-app
  - publish-app

variables:
  GRADLE_OPTS: "-Dorg.gradle.daemon=false -Dorg.gradle.parallel=true"
  GRADLE_USER_HOME: $CI_PROJECT_DIR/.gradle

cache:
  # Cache for Gradle Wrapper
  - key: "wrapper-${CI_COMMIT_REF_SLUG}"
    paths:
      - .gradle/wrapper/

  # Cache for Gradle Dependencies
  - key: "dependencies-${CI_COMMIT_REF_SLUG}"
    paths:
      - .gradle/caches/

before_script:
  - VSNAP=$(head -2 sirius_cli/src/main/resources/sirius_frontend.build.properties | tail -1 | cut -d '=' -f 2)
  - echo "Using Gradle user home at $GRADLE_USER_HOME"


build_test_publish_libs:
  stage: libs
  script:
    - |
      echo "===> Running Unit Tests"
      gradle test --stacktrace
    - |
      echo "===> Running Integration Tests"
      gradle integrationTest --stacktrace
    - |
      if [[ "$CI_COMMIT_BRANCH" == "master" ||  "$CI_COMMIT_BRANCH" == "stable" ]]; then
         echo "===> Publishing Libraries to Gitlab Registry"
         gradle publishMavenJavaPublicationToGitLabRepository --stacktrace
      fi
    - |
      if [[ "$CI_COMMIT_BRANCH" == "stable" ]]; then
        echo "===> Publishing Sirius SDK Public Gitlab Registry"
       gradle publishMavenJavaPublicationToGitLabPublicRepository --stacktrace
      fi

  artifacts:
    when: on_failure
    reports:
      junit:
        - "**/build/test-results/test/TEST-*.xml"
        - "**/build/test-results/integrationTest/TEST-*.xml"
#unitTests:
#  variables:
#    GRADLE_OPTS: "-Dorg.gradle.daemon=false"
#  stage: test-libs
#  script:
#    - ./gradlew test --stacktrace
#  artifacts:
#    when: on_failure
#    reports:
#      junit: "**/build/test-results/test/TEST-*.xml"
#
#integrationTests:
#  variables:
#    GRADLE_OPTS: "-Dorg.gradle.daemon=false"
#  stage: test-libs
#  script:
#    - ./gradlew integrationTest --stacktrace
#  artifacts:
#    when: on_failure
#    reports:
#      junit: "**/build/test-results/integrationTest/TEST-*.xml"

acceptanceTests:
  stage: test-app
  when: manual
  script:
    - gradle acceptanceTest --stacktrace
  artifacts:
    when: on_failure
    reports:
      junit: "**/build/test-results/acceptanceTest/TEST-*.xml"


#buildCLI:
#  stage: build-app
#  when: manual
#  script:
#    - ./gradlew :sirius_dist:sirius_cli_single_os:publishSiriusMSPublicationToMavenLocal -P "build.sirius.starter.jdk.include=true"
#    - mkdir maven_artifacts
#    - mv ~/.m2/repository/de/unijena/bioinf/ms/siriusMS/$VSNAP maven_artifacts
#  cache:
#    key: "$CI_COMMIT_REF_NAME"
#    policy: push
#  artifacts:
#    paths:
#      - ./maven_artifacts/$VSNAP
#    expire_in: 3 days
#  only:
#    refs:
#      - master
#      - stable
#
#buildGUI:
#  stage: build-app
#  when: manual
#  script:
#    - ./gradlew :sirius_dist:sirius_gui_dist:publishSiriusMSPublicationToMavenLocal -P "build.sirius.native.openjfx.exclude=true" -P "build.sirius.starter.jdk.include=true"
#    - mkdir maven_artifacts
#    - mv ~/.m2/repository/de/unijena/bioinf/ms/siriusMS/$VSNAP maven_artifacts
#  cache:
#    key: "$CI_COMMIT_REF_NAME"
#    policy: push
#  artifacts:
#    paths:
#      - ./maven_artifacts/$VSNAP
#    expire_in: 3 days
#  only:
#    refs:
#      - master
#      - stable
#
#testCLI:
#  stage: test-app
#  when: manual
#  script:
#    - mkdir unzipped
#    - unzip maven_artifacts/$VSNAP/siriusMS-$VSNAP-linux64-headless.zip -d unzipped
#    - ./unzipped/sirius/bin/sirius login --user-env SIRIUS_USER --password-env SIRIUS_PW
#    - ./gradlew :sirius_dist:sirius_cli_single_os:distImageTestCICD
#  cache:
#    key: "$CI_COMMIT_REF_NAME"
#    policy: push
#  needs: [buildCLI]
#  dependencies:
#    - buildCLI
#  only:
#    refs:
#      - master
#      - stable
#
#testGUI:
#  stage: test-app
#  when: manual
#  script:
#    - mkdir unzipped
#    - unzip maven_artifacts/$VSNAP/siriusMS-$VSNAP-linux64.zip -d unzipped
#    - ./unzipped/sirius/bin/sirius login --user-env SIRIUS_USER --password-env SIRIUS_PW
#    - ./gradlew :sirius_dist:sirius_cli_single_os:distImageTestCICD
#  cache:
#    key: "$CI_COMMIT_REF_NAME"
#    policy: push
#  needs: [buildGUI]
#  dependencies:
#    - buildGUI
#  only:
#    refs:
#      - master
#      - stable
#
#publishCLI:
#  variables:
#    GRADLE_OPTS: "-Dorg.gradle.daemon=false"
#  stage: publish-app
#  when: manual
#  script:
#    - cd maven_artifacts/$VSNAP
#    - curl -u $ARTIFACTORY_USERNAME:$ARTIFACTORY_TOKEN -X PUT "https://bio.informatik.uni-jena.de/repository/dist-snapshot-local/de/unijena/bioinf/ms/siriusMS/$VSNAP/siriusMS-$VSNAP-linux64-headless.zip" -T siriusMS-$VSNAP-linux64-headless.zip
#    - curl -u $ARTIFACTORY_USERNAME:$ARTIFACTORY_TOKEN -X PUT "https://bio.informatik.uni-jena.de/repository/dist-snapshot-local/de/unijena/bioinf/ms/siriusMS/$VSNAP/siriusMS-$VSNAP.pom" -T siriusMS-$VSNAP.pom
#  cache:
#    key: "$CI_COMMIT_REF_NAME"
#    policy: push
#  needs: [buildCLI, testCLI]
#  dependencies:
#    - buildCLI
#  only:
#    refs:
#      - master
#      - stable
#
#publishGUI:
#  variables:
#    GRADLE_OPTS: "-Dorg.gradle.daemon=false"
#  stage: publish-app
#  when: manual
#  script:
#    - cd maven_artifacts/$VSNAP
#    - curl -u $ARTIFACTORY_USERNAME:$ARTIFACTORY_TOKEN -X PUT "https://bio.informatik.uni-jena.de/repository/dist-snapshot-local/de/unijena/bioinf/ms/siriusMS/$VSNAP/siriusMS-$VSNAP-linux64.zip" -T siriusMS-$VSNAP-linux64.zip
#    - curl -u $ARTIFACTORY_USERNAME:$ARTIFACTORY_TOKEN -X PUT "https://bio.informatik.uni-jena.de/repository/dist-snapshot-local/de/unijena/bioinf/ms/siriusMS/$VSNAP/siriusMS-$VSNAP.pom" -T siriusMS-$VSNAP.pom
#  cache:
#    key: "$CI_COMMIT_REF_NAME"
#    policy: push
#  needs: [buildGUI, testGUI]
#  dependencies:
#    - buildGUI
#  only:
#    refs:
#      - master
#      - stable
#
##push to github to build for multiple OSs
#pushToGitHub:
#  stage: publish-app
#  when: manual
#  script:
#    - git config --global user.email "${GITLAB_GITHUB_SIRIUS_USERNAME}"
#    - git config --global user.name "boeckergitlab"
#    - git remote show origin
#    - git remote set-url --push origin git@github.com:sirius-ms/sirius.git
#    - git remote show origin
#    - git push --follow-tags origin HEAD:$CI_COMMIT_REF_NAME
#  cache:
#    key: "$CI_COMMIT_REF_NAME"
#    policy: push
#  needs: [testCLI, testGUI]
#  only:
#    refs:
#      - stable
#      - master