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@article{Belmann_2015, title={Bioboxes: standardised containers for interchangeable bioinformatics software}, volume={4}, ISSN={2047-217X}, url={https://doi.org/10.1186/s13742-015-0087-0}, DOI={10.1186/s13742-015-0087-0}, number={1}, journal={GigaScience}, publisher={Oxford University Press (OUP)}, author={Belmann, Peter and Dröge, Johannes and Bremges, Andreas and McHardy, Alice C. and Sczyrba, Alexander and Barton, Michael D.}, year={2015}, month={Oct}}
@article{Gr_ning_2018, title={Bioconda: sustainable and comprehensive software distribution for the life sciences}, volume={15}, ISSN={1548-7105}, url={https://doi.org/10.1038/s41592-018-0046-7}, DOI={10.1038/s41592-018-0046-7}, number={7}, journal={Nature Methods}, publisher={Springer Nature}, author={Grüning, Björn and Dale, Ryan and Sjödin, Andreas and Chapman, Brad A. and Rowe, Jillian and Tomkins-Tinch, Christopher H. and Valieris, Renan and Köster, Johannes}, year={2018}, month={Jul}, pages={475–476}}
@article{Hackseq_2017, title={hackseq: Catalyzing collaboration between biological and computational scientists via hackathon}, volume={6}, ISSN={2046-1402}, url={https://doi.org/10.12688/f1000research.10964.2}, DOI={10.12688/f1000research.10964.2}, journal={F1000Research}, publisher={F1000 Research, Ltd.}, year={2017}, month={Apr}, pages={197}}
@article{Hung_2016, title={GUIdock: Using Docker Containers with a Common Graphics User Interface to Address the Reproducibility of Research}, volume={11}, ISSN={1932-6203}, url={https://doi.org/10.1371/journal.pone.0152686}, DOI={10.1371/journal.pone.0152686}, number={4}, journal={PLOS ONE}, publisher={Public Library of Science (PLoS)}, author={Hung, Ling-Hong and Kristiyanto, Daniel and Lee, Sung Bong and Yeung, Ka Yee}, editor={Martens, LennartEditor}, year={2016}, month={Apr}, pages={e0152686}}
@article{Jackman_2016, title={{Linuxbrew and Homebrew for cross-platform package management [v1; not peer reviewed]}}, volume={5(ISCB Comm J)}, url={https://doi.org/10.7490/f1000research.1112681.1}, DOI={10.7490/f1000research.1112681.1}, journal={F1000Research}, publisher={F1000 Research, Ltd.}, author={Jackman, Shaun D and Birol, Inanc}, year={2016}, month={Jul}, pages={1795 (poster)}}
@article{Krampis_2012, title={Cloud BioLinux: pre-configured and on-demand bioinformatics computing for the genomics community}, volume={13}, ISSN={1471-2105}, url={https://doi.org/10.1186/1471-2105-13-42}, DOI={10.1186/1471-2105-13-42}, number={1}, journal={BMC Bioinformatics}, publisher={Springer Nature}, author={Krampis, Konstantinos and Booth, Tim and Chapman, Brad and Tiwari, Bela and Bicak, Mesude and Field, Dawn and Nelson, Karen E}, year={2012}, month={Mar}}
@article{Kurtzer_2017, title={Singularity: Scientific containers for mobility of compute}, volume={12}, ISSN={1932-6203}, url={https://doi.org/10.1371/journal.pone.0177459}, DOI={10.1371/journal.pone.0177459}, number={5}, journal={PLOS ONE}, publisher={Public Library of Science (PLoS)}, author={Kurtzer, Gregory M. and Sochat, Vanessa and Bauer, Michael W.}, editor={Gursoy, AttilaEditor}, year={2017}, month={May}, pages={e0177459}}
@article{Leprevost_2014, title={On best practices in the development of bioinformatics software}, volume={5}, ISSN={1664-8021}, url={https://doi.org/10.3389/fgene.2014.00199}, DOI={10.3389/fgene.2014.00199}, journal={Frontiers in Genetics}, publisher={Frontiers Media SA}, author={Leprevost, Felipe da Veiga and Barbosa, Valmir C. and Francisco, Eduardo L. and Perez-Riverol, Yasset and Carvalho, Paulo C.}, year={2014}, month={Jul}}
@article{Leprevost_2017, title={BioContainers: an open-source and community-driven framework for software standardization}, volume={33}, ISSN={1460-2059}, url={https://doi.org/10.1093/bioinformatics/btx192}, DOI={10.1093/bioinformatics/btx192}, number={16}, journal={Bioinformatics}, publisher={Oxford University Press (OUP)}, author={Leprevost, Felipe da Veiga and Grüning, Björn A and Alves Aflitos, Saulo and Röst, Hannes L and Uszkoreit, Julian and Barsnes, Harald and Vaudel, Marc and Moreno, Pablo and Gatto, Laurent and Weber, Jonas and et al.}, editor={Valencia, AlfonsoEditor}, year={2017}, month={Mar}, pages={2580–2582}}
@article{Menegidio_2017, title={Dugong: a Docker image, based on Ubuntu Linux, focused on reproducibility and replicability for bioinformatics analyses}, volume={34}, ISSN={1460-2059}, url={https://doi.org/10.1093/bioinformatics/btx554}, DOI={10.1093/bioinformatics/btx554}, number={3}, journal={Bioinformatics}, publisher={Oxford University Press (OUP)}, author={Menegidio, Fabiano B and Jabes, Daniela L and Costa de Oliveira, Regina and Nunes, Luiz R}, editor={Valencia, AlfonsoEditor}, year={2017}, month={Sep}, pages={514–515}}