setup.py

# -*- coding: utf-8 -*-

import os
from setuptools import setup, find_packages
from codecs import open
from os import path

here = path.abspath(path.dirname(__file__))

with open(path.join(here, 'README.md'), encoding='utf-8') as f:
    long_description = f.read()

path_version = path.join(here, 'spinalcordtoolbox', 'version.txt')
with open(path_version) as f:
    version = f.read().strip()

setup(
    name='spinalcordtoolbox',
    version=version,
    description='Library of analysis tools for MRI of the spinal cord',
    long_description=long_description,
    url='http://www.neuro.polymtl.ca/home',
    author='NeuroPoly Lab, Polytechnique Montreal',
    author_email='neuropoly@googlegroups.com',
    license='MIT',
    classifiers=[
        'Development Status :: 4 - Beta',
        'Intended Audience :: Healthcare Industry',
        'Intended Audience :: Education',
        'Topic :: Scientific/Engineering :: Medical Science Apps.',
        'License :: OSI Approved :: MIT License',
        'Operating System :: Unix',
        'Operating System :: MacOS',
        'Programming Language :: Python',
        'Programming Language :: Python :: 2',
        'Programming Language :: Python :: 2.7',
    ],
    keywords='Magnetic Resonance Imaging MRI spinal cord analysis template',
    packages=find_packages(exclude=['.git', 'data', 'dev', 'dev.*',
                                    'install', 'testing']),
    include_package_data=True,
    extras_require={
        'docs': [
        'sphinx',
        'sphinxcontrib-programoutput',
        'sphinx_rtd_theme',
        'recommonmark'
        ],
        'mpi': [
        'mpich==3.2',
        'mpi4py==3.0.0',
        ],
    },
    entry_points=dict(
        console_scripts=[
            '{}=spinalcordtoolbox.compat.launcher:main'.format(x) for x in \
            [
                'isct_convert_binary_to_trilinear',
                'isct_minc2volume-viewer',
                'isct_test_ants',
                'sct_analyze_lesion',
                'sct_analyze_texture',
                'sct_apply_transfo',
                'sct_check_dependencies',
                'sct_concat_transfo',
                'sct_compute_ernst_angle',
                'sct_compute_hausdorff_distance',
                'sct_compute_mscc',
                'sct_compute_mtr',
                'sct_compute_mtsat',
                'sct_compute_snr',
                'sct_convert',
                'sct_create_mask',
                'sct_crop_image',
                'sct_deepseg',
                'sct_deepseg_gm',
                'sct_deepseg_lesion',
                'sct_deepseg_sc',
                'sct_denoising_onlm',
                'sct_detect_pmj',
                'sct_dice_coefficient',
                'sct_dmri_compute_bvalue',
                'sct_dmri_compute_dti',
                'sct_dmri_concat_b0_and_dwi',
                'sct_dmri_concat_bvals',
                'sct_dmri_concat_bvecs',
                'sct_dmri_display_bvecs',
                'sct_dmri_moco',
                'sct_dmri_separate_b0_and_dwi',
                'sct_dmri_transpose_bvecs',
                'sct_download_data',
                'sct_extract_metric',
                'sct_flatten_sagittal',
                'sct_fmri_compute_tsnr',
                'sct_fmri_moco',
                'sct_get_centerline',
                'sct_image',
                'sct_label_utils',
                'sct_label_vertebrae',
                'sct_maths',
                'sct_merge_images',
                'sct_process_segmentation',
                'sct_run_batch',
                'sct_propseg',
                'sct_qc',
                'sct_register_multimodal',
                'sct_register_to_template',
                'sct_resample',
                'sct_smooth_spinalcord',
                'sct_straighten_spinalcord',
                'sct_testing',
                'sct_version',
                'sct_warp_template',
            ]
        ],
    ),
)