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A minor point, but maybe this section could be clarified to explain how the M operation is replaced by the =/X convention depending on if WFAlignerGapAffine::getCIGAR() showMismatches is set to true or false. Or perhaps elsewhere. It's a bit confusing that the = is missing from this text: "computes the sequence of alignment operations (i.e., {'M','X','D','I'})"
The text was updated successfully, but these errors were encountered:
Hi,
A minor point, but maybe this section could be clarified to explain how the
M
operation is replaced by the=
/X
convention depending on ifWFAlignerGapAffine::getCIGAR()
showMismatches is set to true or false. Or perhaps elsewhere. It's a bit confusing that the=
is missing from this text: "computes the sequence of alignment operations (i.e., {'M','X','D','I'})"The text was updated successfully, but these errors were encountered: