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cigar clarification in README #101

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rlorigro opened this issue Oct 8, 2024 · 0 comments
Open

cigar clarification in README #101

rlorigro opened this issue Oct 8, 2024 · 0 comments

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@rlorigro
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rlorigro commented Oct 8, 2024

Hi,

A minor point, but maybe this section could be clarified to explain how the M operation is replaced by the =/X convention depending on if WFAlignerGapAffine::getCIGAR() showMismatches is set to true or false. Or perhaps elsewhere. It's a bit confusing that the = is missing from this text: "computes the sequence of alignment operations (i.e., {'M','X','D','I'})"

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