From 33ba70bc029cb79e61333615564c94046485b7c4 Mon Sep 17 00:00:00 2001
From: Felix Wiegand <fxwiegand@wgdnet.de>
Date: Wed, 30 Oct 2024 14:08:10 +0100
Subject: [PATCH] fix: Fix gene card link formatter for datavzrd report and
 update linkout styles

---
 workflow/scripts/gene_card_link_formatter.js | 42 ++++++++++++++------
 1 file changed, 29 insertions(+), 13 deletions(-)

diff --git a/workflow/scripts/gene_card_link_formatter.js b/workflow/scripts/gene_card_link_formatter.js
index 5887acde..72ca303f 100644
--- a/workflow/scripts/gene_card_link_formatter.js
+++ b/workflow/scripts/gene_card_link_formatter.js
@@ -1,15 +1,31 @@
 function gene_card_link_formatter(value, row) {
-    $(function () {
-        $('[data-toggle="tooltip"]').tooltip()
-    });
-        let genes = value.split(",");
-        let rows = "";
-        for (let g of genes) {
-            rows = `${rows}<tr><td><a data-toggle="tooltip" title="Linkout to genecards" href="https://www.genecards.org/cgi-bin/carddisp.pl?gene=${g}" target="_blank" rel="noopener noreferrer">${g}</a></td></tr>`;
-        };
-        let table = `<div style="overflow-y: auto; max-height: 30vh; min-width: 140px;"><table class="table"><thead><tr><th scope="col">Genes</th></tr></thead><tbody>${rows}</tbody></table></div>`;
-        let button = `<a href='#' tabindex='0' class='btn btn-primary' role='button' data-toggle='popover' data-placement="left" data-trigger='focus' data-html='true' data-content='${table}'><svg xmlns="http://www.w3.org/2000/svg" width="16" height="16" fill="currentColor" class="bi bi-table" viewBox="0 0 16 16">
-        <path d="M0 2a2 2 0 0 1 2-2h12a2 2 0 0 1 2 2v12a2 2 0 0 1-2 2H2a2 2 0 0 1-2-2V2zm15 2h-4v3h4V4zm0 4h-4v3h4V8zm0 4h-4v3h3a1 1 0 0 0 1-1v-2zm-5 3v-3H6v3h4zm-5 0v-3H1v2a1 1 0 0 0 1 1h3zm-4-4h4V8H1v3zm0-4h4V4H1v3zm5-3v3h4V4H6zm4 4H6v3h4V8z"/>
-        </svg></a>`;
-        return button;
+    let genes = value.split(",");
+    let rows = "";
+    for (let g of genes) {
+        rows += `<tr style="background-color: #f9f9f9; text-align: left;">
+                    <td style="padding: 8px; border: 1px solid #dee2e6;">
+                        <a style="color: #007bff; text-decoration: none;" data-toggle="tooltip" title="Linkout to genecards" href="https://www.genecards.org/cgi-bin/carddisp.pl?gene=${g}" target="_blank" rel="noopener noreferrer">${g}</a>
+                    </td>
+                </tr>`;
+    }
+    
+    let table = `<div style="overflow-y: auto; max-height: 30vh; min-width: 140px;">
+                    <table style="border-collapse: collapse; width: 100%; box-shadow: 0 2px 10px rgba(0, 0, 0, 0.1);">
+                        <thead>
+                            <tr style="background-color: #007bff; color: white;">
+                                <th scope="col" style="padding: 4px; text-align: left; height: 39px !important;">Genes</th>
+                            </tr>
+                        </thead>
+                        <tbody>
+                            ${rows}
+                        </tbody>
+                    </table>
+                </div>`;
+    
+    let button = `<a href='#' tabindex='0' class='btn btn-primary' role='button' data-toggle='popover' data-placement="left" data-trigger='focus' data-html='true' data-content='${table}'>
+                    <svg xmlns="http://www.w3.org/2000/svg" width="16" height="16" fill="currentColor" class="bi bi-table" viewBox="0 0 16 16">
+                    <path d="M0 2a2 2 0 0 1 2-2h12a2 2 0 0 1 2 2v12a2 2 0 0 1-2 2H2a2 2 0 0 1-2-2V2zm15 2h-4v3h4V4zm0 4h-4v3h4V8zm0 4h-4v3h3a1 1 0 0 0 1-1v-2zm-5 3v-3H6v3h4zm-5 0v-3H1v2a1 1 0 0 0 1 1h3zm-4-4h4V8H1v3zm0-4h4V4H1v3zm5-3v3h4V4H6zm4 4H6v3h4V8z"/>
+                    </svg></a>`;
+    
+    return button;
 }