diff --git a/config/config.yaml b/config/config.yaml index e8719c703..3eee881b3 100644 --- a/config/config.yaml +++ b/config/config.yaml @@ -286,9 +286,9 @@ params: extra: "" # If activated preprocessed alignment properties can be applied to each sample individually. -# Paths to the alignment properties json-files need to be set in a tsv-file containing a property name and path. -# Alignment properties will be derived from a customizable column in the sample sheet. -# If not property name is set for a sample the alignment properties will be estimated best on the samples mapping. +# Paths to the alignment properties json files need to be set in a tsv file containing a property name and path. +# Alignment properties names will be taken from a customizable column in the sample sheet. +# If no property name is set for a sample or custom_alignment_properties is deactivated the alignment properties will be estimated estimated on the sample's read alignments. custom_alignment_properties: activate: false column: "panel"