Version 0.45.1

Fixes a bug in the ensembl-sequence wrapper, where multiple versions of the reference genome could be downloaded. Default should be the primary assembly, if available.

Version 0.45.0

This release adds a wrapper for tximport and fixes a bug in the primerclip wrapper.

Version 0.44.3

Fixes a bug in ensembl variation wrapper.

Version 0.44.2

This release fixes a bug in the snpeff wrapper when using BCF input.

Version 0.44.1

This release fixed a bug in the ensembl-variation wrapper. It now correctly outputs vcf.gz instead of bcf.

Version 0.44.0

This release adds a bcftools norm wrapper, adds contig lengths to ensembl variation vcfs and allows to deactivate trimming when using the fastp wrapper.

Version 0.43.1

This release fixes a bug in the bio/references/ensembl-variation wrapper.

Version 0.43.0

This release adds

• wrappers for downloading reference data from Ensembl
• infernal
• transdecoder
• hmmer
• paladin
• bismark
• UCSC tools
• primerclip
• last aligner
• more bedtools and bcftools commands
• PLASS protein assembler

Version 0.42.0

This release makes the parametrization of the cutadapt paired-end wrapper more ergonomic.

Version 0.41.0

This release adds a wrapper for picard CollectTargetedPcrMetrics.