From e2e1ad2067c028a602e65522700ca5d2b569043a Mon Sep 17 00:00:00 2001 From: Surya Saha Date: Tue, 30 Jun 2015 09:28:10 -0400 Subject: [PATCH] added status messages for reverse order insertions --- lib/Bio/GenomeUpdate/TPF.pm | 3 +++ 1 file changed, 3 insertions(+) diff --git a/lib/Bio/GenomeUpdate/TPF.pm b/lib/Bio/GenomeUpdate/TPF.pm index 5938d01..0f65ab0 100644 --- a/lib/Bio/GenomeUpdate/TPF.pm +++ b/lib/Bio/GenomeUpdate/TPF.pm @@ -2089,6 +2089,9 @@ Returns the length of the accession. Added for use in switchover and trim files $contig_bac_loop_counter = $component_accessions_count - 1 ; while ($contig_bac_loop_counter >= 0 ){ my $contig_bac_to_insert = Bio::GenomeUpdate::TPF::TPFSequenceLine->new(); + print STDERR "******** inserting "; + print STDERR $component_accessions_arr[$contig_bac_loop_counter]; + print STDERR "\n"; $contig_bac_to_insert->set_accession($component_accessions_arr[$contig_bac_loop_counter]); $bac_inserted_accessions{$component_accessions_arr[$contig_bac_loop_counter]} = 'inserted'; #recording accession name $contig_bac_to_insert->set_local_contig_identifier($bac_to_insert->get_local_contig_identifier() );