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Singleton BACs should be inserted in the order of occurence in the filtered group_coords file #53

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suryasaha opened this issue Jul 10, 2015 · 1 comment
Open

Singleton BACs should be inserted in the order of occurence in the filtered group_coords file #53

suryasaha opened this issue Jul 10, 2015 · 1 comment
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bug
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SL3.0

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@suryasaha
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group_coords file
gi|290775087|gb|AC240216.2| SL2.50ch10 4289172 4387688 98516 1 98517 98517 1000 1 1 0 Contains 0 0 97517 0 0
gi|81295483|gb|AC171731.1| SL2.50ch10 4385074 4458461 73387 1 73387 73387 1000 1 1 0 Contains 0 0 72387 0 0
gi|339639709|gb|AC244887.2| SL2.50ch10 4478239 4578469 100230 1 100588 100588 1000 -1 1 0 Contains 0 0 99588 0 0

shows up as
AEKE02023497 ? SL2.50sc05925 MINUS
AC244887 ? SL2.50sc05925 MINUS
AC171731 ? SL2.50sc05925 CONTAINED AEKE02023497 ?
AC240216 ? SL2.50sc05925 CONTAINED AEKE02023497 ?`
AEKE02023493 ? SL2.50sc05925 MINUS

should be
AEKE02023497 ? SL2.50sc05925 MINUS
AC240216 ? SL2.50sc05925 CONTAINED AEKE02023497 ?
AC171731 ? SL2.50sc05925 CONTAINED AEKE02023497 ?
AC244887 ? SL2.50sc05925 MINUS
AEKE02023493 ? SL2.50sc05925 MINUS
@suryasaha suryasaha added the bug label Jul 10, 2015
@suryasaha suryasaha added this to the SL3.0 milestone Jul 10, 2015
@suryasaha
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There is no record of TPF lines inserted before/after a WGS contig. Need to remember the before and after count and modify $insert_line_number accordingly before next insertion for a WGS contig

suryasaha added a commit that referenced this issue Jul 13, 2015
@suryasaha
record insertion event and modify if that line was already inserted a…
b2cec9d 
…t, issue #53
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@suryasaha