bring system up to sgn-363.0, fixes issue with transplanting_date, ma… · solgenomics/breedbase_dockerfile@983e8d0

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bring system up to sgn-363.0, fixes issue with transplanting_date, ma…

…tview refresh, solgs traits, location update, improvements to catalog functions, R updates to solgs, fixes issue with pedigree upload.

lukasmueller committed Sep 14, 2023

1 parent 7db29b7 commit 983e8d0

cxgn/sgn

Submodule sgn updated 37 files

+4 −8		R/solGS/phenotypic_correlation.r
+299 −0		db/00167/MakeRankNumberStockPropViews.pm
+3 −3		js/package.json
+1 −1		lib/CXGN/BrAPI/v1/Studies.pm
+3 −2		lib/CXGN/BrAPI/v2/Germplasm.pm
+6 −1		lib/CXGN/BrAPI/v2/Locations.pm
+15 −11		lib/CXGN/BrAPI/v2/ObservationUnits.pm
+20 −6		lib/CXGN/BreederSearch.pm
+65 −8		lib/CXGN/Fieldbook/TraitInfo.pm
+11 −7		lib/CXGN/Pedigree/AddPedigrees.pm
+35 −124		lib/CXGN/Stock/ParseUpload/Plugin/CatalogXLS.pm
+2 −2		lib/CXGN/Stock/Search.pm
+1 −1		lib/CXGN/Stock/SearchVector.pm
+36 −0		lib/CXGN/Stock/Seedlot.pm
+23 −4		lib/CXGN/Stock/StockLookup.pm
+1 −1		lib/SGN/Controller/AJAX/BrAPI.pm
+219 −28		lib/SGN/Controller/AJAX/Catalog.pm
+8 −1		lib/SGN/Controller/AJAX/FieldBook.pm
+0 −4		lib/SGN/Controller/AJAX/Order.pm
+36 −0		lib/SGN/Controller/AJAX/Stock.pm
+8 −2		lib/SGN/Controller/Order.pm
+1 −1		lib/solGS/JobSubmission.pm
+1 −1		mason/breeders_toolbox/trial/trial_details.mas
+20 −47		mason/order/add_catalog_item_dialog.mas
+192 −0		mason/order/add_catalog_using_list_dialog.mas
+7 −2		mason/order/catalog.mas
+4 −9		mason/order/edit_catalog_details_dialog.mas
+64 −0		mason/order/manage_catalog_usage_info.mas
+5 −9		mason/order/upload_catalog_items_dialog.mas
+113 −17		ontology/SP.obo
+5 −0		sgn.conf
+141 −32		t/data/fixture/cxgn_fixture.sql
+ −		t/data/stock/catalog_items.xls
+ −		t/data/stock/catalog_items.xlsx
+64 −92		t/unit_fixture/CXGN/Stock/CatalogOrder.t
+12 −0		t/unit_fixture/CXGN/Trial.t
+92 −1		t/unit_mech/AJAX/_BrAPIv2_phenotyping.t

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