test_static.yml

# Simple workflow for deploying static content to GitHub Pages
name: Build documentation with R bookmark

on:
  # Runs on pushes/marge targeting the default branch
  pull_request:    
    paths:
      - 'docs/r_markdown_docs/**'

  # Allows you to run this workflow manually from the Actions tab
  workflow_dispatch:

# Sets permissions of the GITHUB_TOKEN to allow deployment to GitHub Pages
permissions:
  contents: write 
  id-token: write

jobs:
  # Single deploy job since we're just deploying
  build_and_deploy_static_pages_for_manual:          
    runs-on: ubuntu-latest
    container: 
      image: bienkowskid/fedora40-r-bookdown
    steps:
      - name: Checkout
        uses: actions/checkout@v4
        with:          
          fetch-depth: 0
          ref: ${{ github.event.pull_request.head.ref }}        
      - name: Save directory for checkout
        run: git config --global --add safe.directory "$GITHUB_WORKSPACE"
      - name: Create gitbook         
        working-directory: ./docs/r_markdown_docs
        run: R -q -e 'bookdown::render_book("index.Rmd", "bookdown::gitbook")'        
      - name: Create manual pdf         
        working-directory: ./docs/r_markdown_docs
        run: R -q -e 'bookdown::render_book("index.Rmd", "bookdown::pdf_book")'        
      - name: Commit and push documentation        
        run: |          
          date > generated.txt
          git config user.name github-actions
          git config user.email github-actions@github.com
          git add --force --all docs/
          git commit -m "update bookdown docs"
          git push